View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0454_low_2 (Length: 448)
Name: NF0454_low_2
Description: NF0454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0454_low_2 |
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| [»] scaffold0496 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 10879515 - 10879105
Alignment:
| Q |
30 |
caacaagctcaatctcgtgacttttgagagagcttatgagatcctccagtctcagcgtgtccaagtctttggcttcatgaatggctgttatatttgtccg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879515 |
caacaagctcaatctcgtgacttttgagagagcttatgagatcctccagtctcagcgtgtccaagtctttggcttcatgaatggctgttatatttgtccg |
10879416 |
T |
|
| Q |
130 |
gaatctggttggatgacttctcaaaatcttcttgacatgatcagatacggtatatctcttctttaatacctgaaggccagattgaatcaattgaaacctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879415 |
gaatctggttggatgacttctcaaaatcttcttgacatgatcagatacggtatatctcttctttaatacctgaaggccagattgaatcaattgaaacctt |
10879316 |
T |
|
| Q |
230 |
gaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtttaccaaatggttagccttagcttccgtaacctgttgatttccct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879315 |
gaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtttaccaaatggttagccttagcttccgtaacctgttgatttccct |
10879216 |
T |
|
| Q |
330 |
cataagtcgagcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879215 |
cataagtcgagcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacg |
10879116 |
T |
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| Q |
430 |
caccctatgat |
440 |
Q |
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||||||||||| |
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| T |
10879115 |
caccctatgat |
10879105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 13293071 - 13292987
Alignment:
| Q |
222 |
gaaaccttgaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtttaccaaatggttagccttagc |
306 |
Q |
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||||||||||||||||||||||||| | ||||| || ||||| |||| |||| |||||| | || || |||||||||||||| |
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| T |
13293071 |
gaaaccttgaatacatggttttaatatcttcatctttcttcattttaaaaagctcatactgatgaactaactggttagccttagc |
13292987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 25917682 - 25917544
Alignment:
| Q |
34 |
aagctcaatctcgtgacttttgagagagcttatgagatcctccagtctcagcgtgtccaagtctttggcttcatgaatggctgttatatttgtccggaat |
133 |
Q |
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|||||||||||| |||||||||||||| | |||||| | |||||| || || || |||||||| || || || ||||||| ||||| |||| |||| |
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| T |
25917682 |
aagctcaatctcatgacttttgagagaacatatgaggttctccagacttagtgtatccaagtcctttgcctcctgaatggttgttacctttggaatgaat |
25917583 |
T |
|
| Q |
134 |
ctggttggatgacttctcaaaatcttcttgacatgatca |
172 |
Q |
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|||| |||||||| || ||||| ||||||||||||||| |
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| T |
25917582 |
ctggcaggatgactcctaaaaatattcttgacatgatca |
25917544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 24278554 - 24278417
Alignment:
| Q |
220 |
ttgaaaccttgaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtttaccaaatggttagccttagcttccgtaacctgt |
319 |
Q |
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|||||||||||| |||||| ||| ||| | | ||| ||| ||||||||||||||| ||| || | |||||| |||||| | |||||||| |||||||| |
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| T |
24278554 |
ttgaaaccttgagtacatgatttcaatatctccatcttccttcattctaaagagctcatattgatgtaccaattggttaactttagcttctttaacctgt |
24278455 |
T |
|
| Q |
320 |
tgatttccctcataagtcgagcacagagattcaaagat |
357 |
Q |
| |
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|| | || ||||| || ||||||| |||||||||||| |
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| T |
24278454 |
tggatcccttcataggtagagcacaaagattcaaagat |
24278417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 440
Target Start/End: Original strand, 10779 - 10958
Alignment:
| Q |
261 |
tcattctaaagagcttatactggtttaccaaatggttagccttagcttccgtaacctgttgatttccctcataagtcgagcacagagattcaaagatggt |
360 |
Q |
| |
|
|||||||||| |||| ||| || || ||||| ||||| |||| |||||| || | ||||| ||||| ||||| | ||||||||||||||||| ||||| |
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| T |
10779 |
tcattctaaaaagctcatattgattaaccaattggttctccttggcttccctatcatgttggtttccttcatagatagagcacagagattcaaatatggt |
10878 |
T |
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| Q |
361 |
tttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatgat |
440 |
Q |
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||| ||| || | ||||||||||||| ||||| ||| | ||||| | | |||| |||| ||| | |||||||||||| |
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| T |
10879 |
cttgacagtagacctattgacaatcttcaaatattctgaatgaggtagaacatctataagaattctatgcaccctatgat |
10958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 10087 - 10128
Alignment:
| Q |
30 |
caacaagctcaatctcgtgacttttgagagagcttatgagat |
71 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||||||| |
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| T |
10087 |
caacaagctcaatctcttgacttttaagagagcttatgagat |
10128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 4447706 - 4447750
Alignment:
| Q |
34 |
aagctcaatctcgtgacttttgagagagcttatgagatcctccag |
78 |
Q |
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|||||||||||| |||||||||||||| ||||| |||| |||||| |
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| T |
4447706 |
aagctcaatctcatgacttttgagagaacttatcagattctccag |
4447750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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