View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0454_low_6 (Length: 360)
Name: NF0454_low_6
Description: NF0454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0454_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 38025453 - 38025160
Alignment:
| Q |
13 |
aatatttatcacgaacaaattaatcaagatgtggtaagtttttgttgatagaaaatttaaagtactaccatctgatcatcataacacactcactaccnnn |
112 |
Q |
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| T |
38025453 |
aatatttatcacgaacaaattaatcaagatgtggtaagtttttgttgatagcaaatttaaagtactaccatctgatcatcataacacactcactaccaaa |
38025354 |
T |
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| Q |
113 |
nnnnnnntaataa--tactgatcgggtatgcactgagaaacaaagatgtgaagaataaactttcctcattgaataatattgccgtttgatattacaaact |
210 |
Q |
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| T |
38025353 |
aaaaaataaaaaaaatactgatcgggtatgcactgagaaacaaagatatgaagaataaactttcctcattgaataatattgccgtttgatattacaaact |
38025254 |
T |
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| Q |
211 |
ttacatagtttatctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgaca |
304 |
Q |
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| T |
38025253 |
ttacatagtttatctaatctaacatcactatgtaatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgaca |
38025160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 38032064 - 38031945
Alignment:
| Q |
124 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagttt |
221 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| || |
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| T |
38032064 |
aatactgatcgggtatgcactgagaaacatagatatgtgaagaataaactttcctcattgaataatattgccgtttaagattacaaaatttacataatta |
38031965 |
T |
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| Q |
222 |
atctaatctaacatcactat |
241 |
Q |
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| T |
38031964 |
atataatctaacatcactat |
38031945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 38003819 - 38003694
Alignment:
| Q |
124 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataa------tattgccgtttgatattacaaactttaca |
215 |
Q |
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||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |
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| T |
38003819 |
aatactgatcgggtatgcactttgaaacatagatatgtgaagaataaactttcctcattgaataataatagtactgtagtttgatattacaaactttaca |
38003720 |
T |
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| Q |
216 |
tagtttatctaatctaacatcactat |
241 |
Q |
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|| | ||||||||||| |||||||| |
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| T |
38003719 |
taaataatctaatctaatatcactat |
38003694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 38031937 - 38031900
Alignment:
| Q |
267 |
ttaatcaattaggaccccagcagctcaagtacatgaca |
304 |
Q |
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| T |
38031937 |
ttaatcaattaggaccccagcagctcaagtacatgaca |
38031900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 38003692 - 38003649
Alignment:
| Q |
261 |
tacaaattaatcaattaggaccccagcagctcaagtacatgaca |
304 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
38003692 |
tacaaattaatcaattgggaccccaacagctcaagtacatgaca |
38003649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 2912525 - 2912491
Alignment:
| Q |
270 |
atcaattaggaccccagcagctcaagtacatgaca |
304 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
2912525 |
atcaatttggaccccagcagctcaagtacatgaca |
2912491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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