View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0455_high_21 (Length: 279)
Name: NF0455_high_21
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 27488189 - 27488386
Alignment:
| Q |
28 |
agagataaaagttcttgaatcagagctggagggtaggatttaaggatgagcctatactcttactatctcaaaaacaacannnnnnnnnnnatgaaagttg |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27488189 |
agagataaaacttcttgaatcagagctggagggtaggatttaaggacgagcctatactcttactatctcaaaaacaacatttttttt---atgaaagttg |
27488285 |
T |
|
| Q |
128 |
ctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatagattctgatgaataaaagctgatcgtaatgtatcttccgattggtt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27488286 |
ctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatatattctgatgaataaaagctgatcggaatgtatcttccgattggtt |
27488385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 27480837 - 27481034
Alignment:
| Q |
28 |
agagataaaagttcttgaatcagagctggagggtaggatttaaggatgagcctatactcttactatctcaaaaacaacannnnnnnnnnnatgaaagttg |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27480837 |
agagataaaacttcttgaatcagagctggagggtaggatttaaggacgagcctatactcttactatctcaaaaacaacatttttttt---atgaaagttg |
27480933 |
T |
|
| Q |
128 |
ctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatagattctgatgaataaaagctgatcgtaatgtatcttccgattggtt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27480934 |
ctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatatattcagatgaataaaagctgatcggaatgtatcttccgattggtt |
27481033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 333 times since January 2019
Visitors: 3263