View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_high_3 (Length: 559)
Name: NF0455_high_3
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 10011371 - 10011820
Alignment:
| Q |
17 |
cacagagcttggatttggacaacaaagaggggtgttcatcttttgcagaaaaaataagaaatcctcggtgatcattgaatcgatccaaaacatgtcgtaa |
116 |
Q |
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| T |
10011371 |
cacagagcttggatttggacaacaaagaggggtgttcatcttttgcagaaaaaataagaaatcctcggtgatcattgaatcgatccaaaacatgtcgtaa |
10011470 |
T |
|
| Q |
117 |
atttcgttgttgaagaaggttgatgaaggattctggcggagaacatgcagctatggagatggcgttgaagagttggatggatgctgtgttgttgaaccaa |
216 |
Q |
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| T |
10011471 |
atttcgttgttga----------tgaaagattctggcggagaacatgcagctatggagatggcattgaagagttggatggatactgtgctgttgaaccaa |
10011560 |
T |
|
| Q |
217 |
gggaagagagcactgtgattcctatagttagcatgggaagaagagctagaatnnnnnnngttatgatagatgctggtttagtgtgtgaacatacgtggga |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10011561 |
gggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatgatagatgctggtttagtgtgtgaacatgcgtggga |
10011660 |
T |
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| Q |
317 |
aatagatcagttgcatgttttccatatagtacaccaaggtacattattaattgtggtaagaaa--aacgtctgaaggtttatatgtgagccatggagaat |
414 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
10011661 |
aatagatcagctgcatgttttccatatagtacaccaaggta-attattaattgtggtaagaaagcaacgtctgaaggtctatatgtgagccatggagaat |
10011759 |
T |
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| Q |
415 |
ataaacggtttttgaatgtattgagtgtttgctgactcatggttagtaacatccatatata |
475 |
Q |
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| T |
10011760 |
ataaatggtttttggatgtattgattgtttactgactcatggttagtaacatccatatata |
10011820 |
T |
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