View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_high_7 (Length: 443)
Name: NF0455_high_7
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_high_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 38630261 - 38629848
Alignment:
| Q |
30 |
atgtcttctccatttttctttctatacaaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgc |
129 |
Q |
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| T |
38630261 |
atgtcttctccatttttctttctataccaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgc |
38630162 |
T |
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| Q |
130 |
tacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacagattcttccctcgtgcatttgtgaggtcatactaattcggttatcgctata |
229 |
Q |
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| T |
38630161 |
tacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacagattcttccctcgtgcatttgtgaggtcatactaattcggttatcgctata |
38630062 |
T |
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| Q |
230 |
atattaaactgtaattgaggttaagctgcgaacttctatattgcagttacatgtggttgcaattgcggttgtgatgtcttttgatagacatgtaaaacag |
329 |
Q |
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| T |
38630061 |
atattaaactgtaattgaggttaagctgtgaacttctatattgcagttacatgtggttgcaattgcggttgtgatgtcttttgatagacatgaaaaactg |
38629962 |
T |
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| Q |
330 |
ttataatgaggttgctgccagcaatttaaaaccattgtcagcatctgaaatagtagataactataaatggcttgttctcataatgttcgggttcatagtt |
429 |
Q |
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| T |
38629961 |
ttataatgaggttgctgccagcaatttaaaaccattgtcagcatctgaaatagtaaaaaactataaatggcttgttctcataatgttcgggttcatagtt |
38629862 |
T |
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| Q |
430 |
catacaagtatttc |
443 |
Q |
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| T |
38629861 |
catacaagtatttc |
38629848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 38695745 - 38695825
Alignment:
| Q |
73 |
tcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaa |
156 |
Q |
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| T |
38695745 |
tcaccaatgcatcgtgtctatagg---atctgccttgcgctagttcacataccctgctacgacatgtatttattgatagtgaaa |
38695825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 38696041 - 38696089
Alignment:
| Q |
351 |
caatttaaaaccattgtcagcatctgaaatagtagataactataaatgg |
399 |
Q |
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| T |
38696041 |
caatttaaaactattgtcggcatgtgaaatagtagaaaactataaatgg |
38696089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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