View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_high_8 (Length: 422)
Name: NF0455_high_8
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 356
Target Start/End: Original strand, 43093057 - 43093384
Alignment:
| Q |
29 |
actcaaaatgtttgatatatatgtcaagagatcaaccatatgtatataaacgataagaggctaaatgagacctgaatttcttgccaagaaaaagaatctc |
128 |
Q |
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| T |
43093057 |
actcaaaatgtttgatatatatgtcaagagatcaaccatatgtatataaacgataagaggctaaatgagacctgaatttctttccaagaaaaagaatctc |
43093156 |
T |
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| Q |
129 |
cagtagaatagtacacggaattattgccaactttgtcatctgaatgcatatgtaaaagagtctgttaaaaaattcttgataaaaatggccaaacaacaac |
228 |
Q |
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| T |
43093157 |
cagtagaatagtacacggaattattgccaactttgtcatctgaatgcatatgtaaaagagtctgttaaaaaattattgataaaaatgcccaaacaacaac |
43093256 |
T |
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| Q |
229 |
aataaaggctttgaaaaatagaacacgtacnnnnnnntacctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattcc |
328 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43093257 |
aataaaggctttgaaaaatagaacacgtacaaaaaaacacctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattcc |
43093356 |
T |
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| Q |
329 |
atttagaattccaaatcccatctctgct |
356 |
Q |
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| T |
43093357 |
atttagaattccaaatcccatcactgct |
43093384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 43085348 - 43085421
Alignment:
| Q |
273 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcc |
346 |
Q |
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||||| || ||||||||||| || || ||||||||||| | ||||| ||||||||||||| ||| |||||||| |
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| T |
43085348 |
tagaagccgacagaattgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatcc |
43085421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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