View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0455_low_10 (Length: 418)

Name: NF0455_low_10
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0455_low_10
NF0455_low_10
[»] chr5 (1 HSPs)
chr5 (11-298)||(3920564-3920873)
[»] chr3 (4 HSPs)
chr3 (151-279)||(43263802-43263929)
chr3 (222-281)||(21708295-21708354)
chr3 (161-258)||(41799977-41800074)
chr3 (198-276)||(36747224-36747302)
[»] scaffold0700 (1 HSPs)
scaffold0700 (185-273)||(5144-5232)
[»] chr6 (2 HSPs)
chr6 (204-288)||(6562350-6562434)
chr6 (185-253)||(5720609-5720677)
[»] chr8 (2 HSPs)
chr8 (206-273)||(27823241-27823308)
chr8 (225-275)||(39240870-39240920)
[»] chr7 (4 HSPs)
chr7 (149-251)||(28117313-28117414)
chr7 (205-273)||(19527044-19527112)
chr7 (168-253)||(45266697-45266782)
chr7 (206-274)||(38947521-38947589)
[»] chr1 (3 HSPs)
chr1 (142-254)||(11803124-11803236)
chr1 (185-275)||(15826454-15826546)
chr1 (185-275)||(29141940-29142032)
[»] chr4 (2 HSPs)
chr4 (188-271)||(45685742-45685825)
chr4 (240-276)||(13968173-13968209)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 3920564 - 3920873
Alignment:
Q  11 aattcgatgaacaatgagtagttgagtgcattcaatgttgctactcagtggtaattcattcacactgagccactttcattcatttttcaaaccaaggtac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920564 aattcgatgaacaatgagtagttgagtgcattcaatgttgctactcagtggtaattcattcacactgagccactttcattcatttttcaaaccaaggtac 3920663  T
Q  111 tattggtttttgtgc----------------------ctgctaaaactaacccgttttttaaagttcataagaagttacttttgatgtatgacatcgaca 188  Q
    |||||||||||||||                      |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  3920664 tattggtttttgtgcatttttcactcataattcccctctgctaaaactaacccgttttttaaagttcataagaagtttcttttgatgtatgtcattgaca 3920763  T
Q  189 tatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaatacggttgtctggtaa 288  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3920764 tatcaaatgatttttaattaatgtcaaatgtaatagatatgatctatattataatatctttcaatcaaatggttgattttgtaatacggttgtctggtaa 3920863  T
Q  289 ggaatcatca 298  Q
    ||||| ||||    
T  3920864 ggaattatca 3920873  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 43263802 - 43263929
Alignment:
Q  151 agttcataagaagttacttttgatgtatgacatcgacatatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctttc 250  Q
    ||||||||||| |||| ||||||| |||  ||| | |||||||||| || | | |||||||||| || |  |||||||||||||||||||||||| ||||    
T  43263802 agttcataagacgttaattttgatttatctcattgccatatcaaataatatatgattaatgtcatattttgtagacatgatctatattataatatgtttc 43263901  T
Q  251 aatcaaacggttgattttgtaatacggtt 279  Q
    |||||||||| ||||||||||| ||||||    
T  43263902 aatcaaacgg-tgattttgtaaaacggtt 43263929  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 21708354 - 21708295
Alignment:
Q  222 tagacatgatctatattataatatctttcaatcaaacggttgattttgtaatacggttgt 281  Q
    ||||||||||||||  | ||| ||||||||||| |||| |||||||||||||||||||||    
T  21708354 tagacatgatctatgatgtaacatctttcaatccaacgattgattttgtaatacggttgt 21708295  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 41799977 - 41800074
Alignment:
Q  161 aagttacttttgatgtatgacatcgacatatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaac 258  Q
    |||||| |||||||||||   || ||||||||||||  ||||| |||||||| |||| |  |||| ||||| ||| ||||||||| ||||||||||||    
T  41799977 aagttaattttgatgtatttaattgacatatcaaatagtttttgattaatgtaaaattttgtagatatgatttatgttataatatatttcaatcaaac 41800074  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 36747224 - 36747302
Alignment:
Q  198 atttttaattaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaatacg 276  Q
    ||||||||||||| |||||| | ||||| ||||| ||| ||||||||| |||||||| ||| ||  ||||| |||||||    
T  36747224 atttttaattaatatcaaattttatagaaatgatatatgttataatatgtttcaatctaacagtcaattttttaatacg 36747302  T

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Target: scaffold0700 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 5232 - 5144
Alignment:
Q  185 gacatatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaat 273  Q
    |||||||||||| |||||| ||||||||||||  | ||||||||||||||| |||||||| ||||||||| |||| || ||||| ||||    
T  5232 gacatatcaaataattttttattaatgtcaaactttatagacatgatctatgttataatagctttcaatccaacgtttaattttttaat 5144  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 6562350 - 6562434
Alignment:
Q  204 aattaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaatacggttgtctggtaa 288  Q
    |||||||||||||| |  |||||||||||||| | ||||||  |||||||| || |||||||||||||||| |||| | ||||||    
T  6562350 aattaatgtcaaattttgtagacatgatctatgtgataatagttttcaatccaatggttgattttgtaatatggttatgtggtaa 6562434  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 5720609 - 5720677
Alignment:
Q  185 gacatatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctttcaat 253  Q
    |||||||||||| |||| | ||| ||||||||| | ||||||||| |||||  ||| ||||||||||||    
T  5720609 gacatatcaaatgatttatgattcatgtcaaattttatagacatggtctatgctattatatctttcaat 5720677  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 27823241 - 27823308
Alignment:
Q  206 ttaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaat 273  Q
    ||||||| |||| | ||| | ||||||||| |||||||||||||||||| |||||| |||||||||||    
T  27823241 ttaatgtaaaatttcataaatatgatctatgttataatatctttcaatccaacggtcgattttgtaat 27823308  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 39240920 - 39240870
Alignment:
Q  225 acatgatctatattataatatctttcaatcaaacggttgattttgtaatac 275  Q
    ||||||||||||||||||||| |||||||| ||||||  |||| |||||||    
T  39240920 acatgatctatattataatatgtttcaatctaacggtctatttcgtaatac 39240870  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 28117313 - 28117414
Alignment:
Q  149 aaagttcataagaagttacttttgatgtatgacatcgacatatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctt 248  Q
    ||||||||| ||| |||| |||||||| ||  ||| ||||||||||||||| |   || ||||||||||   |||| |||||||||||||||||||||||    
T  28117313 aaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtatag-catgatctatattataatatctt 28117411  T
Q  249 tca 251  Q
    |||    
T  28117412 tca 28117414  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 19527112 - 19527044
Alignment:
Q  205 attaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaat 273  Q
    ||||||||||||| |  | |||||||||||| | |||||| ||||||||| |||||| |||||||||||    
T  19527112 attaatgtcaaattttgttgacatgatctatgtgataatagctttcaatccaacggtggattttgtaat 19527044  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 45266782 - 45266697
Alignment:
Q  168 ttttgatgtatgacatcgacatatcaaattatttttaattaatgtcaaatgtaatag-acatgatctatattataatatctttcaat 253  Q
    |||||||||||   || ||||||||||||||||||| |||||||| |||| | |||| | || |||||| |||||||||||||||||    
T  45266782 ttttgatgtatcttattgacatatcaaattattttttattaatgttaaat-ttatagaaaattatctatgttataatatctttcaat 45266697  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 38947589 - 38947521
Alignment:
Q  206 ttaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgtaata 274  Q
    ||||||| |||| | ||| ||||||||||| || ||||||||||||||| ||| ||  |||||||||||    
T  38947589 ttaatgtaaaattttatacacatgatctatgttttaatatctttcaatccaacagtcaattttgtaata 38947521  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 11803124 - 11803236
Alignment:
Q  142 gttttttaaagttcataagaagttacttttgatgtatgacatcgacatatcaaattatttttaattaatgtcaaatgtaatagac-atgatctatattat 240  Q
    |||||||||| || |||||| |||| |||||||| ||  ||| |||| ||||| |||||||  ||||||||||||| | ||| || | ||||||||||||    
T  11803124 gttttttaaa-ttgataagacgttaattttgatgcatctcattgacaaatcaacttattttcgattaatgtcaaattttatatacaaagatctatattat 11803222  T
Q  241 aatatctttcaatc 254  Q
    ||||||| ||||||    
T  11803223 aatatctctcaatc 11803236  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 15826454 - 15826546
Alignment:
Q  185 gacatatcaaattatttttaattaatgtcaaatgtaatagaca--tgatctatattataatatctttcaatcaaacggttgattttgtaatac 275  Q
    |||||||||||| |||| | ||||||||||||| | ||| |||  |||| ||||||||||||||| |||||| || |||  ||||| ||||||    
T  15826454 gacatatcaaataatttatgattaatgtcaaattttatatacacatgatttatattataatatctatcaatccaatggtcaattttataatac 15826546  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 29142032 - 29141940
Alignment:
Q  185 gacatatcaaattatttttaattaatgtcaaatgtaatagacat--gatctatattataatatctttcaatcaaacggttgattttgtaatac 275  Q
    ||||||| |||| |||||||||||||||||||| | ||| | ||  || |||||||||||||| |||||||| |||  | |||||| ||||||    
T  29142032 gacatattaaatgatttttaattaatgtcaaattttatatagatgagagctatattataatatttttcaatccaacaatcgattttataatac 29141940  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 45685825 - 45685742
Alignment:
Q  188 atatcaaattatttttaattaatgtcaaatgtaatagacatgatctatattataatatctttcaatcaaacggttgattttgta 271  Q
    ||||||||| |||| | |||||| |||||| | ||| |||| ||||||||||||| ||||||||||| |||  | |||||||||    
T  45685825 atatcaaatgatttcttattaatatcaaattttataaacattatctatattataacatctttcaatctaacaatcgattttgta 45685742  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 13968173 - 13968209
Alignment:
Q  240 taatatctttcaatcaaacggttgattttgtaatacg 276  Q
    ||||||||||||||||||||||  |||||||||||||    
T  13968173 taatatctttcaatcaaacggtcaattttgtaatacg 13968209  T

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