View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_15 (Length: 384)
Name: NF0455_low_15
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 25456652 - 25456521
Alignment:
| Q |
9 |
gaagaaaatcaaacaaagtcgtataacctgcctatatata----aggaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatatttactaaa |
104 |
Q |
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| T |
25456652 |
gaagaaaatgaaacaaagtcgtataacctgcctatatatatataaggaaaaaacgatgacttgtcaagaaagaaaactcatcaattacatatttactaaa |
25456553 |
T |
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| Q |
105 |
atgccccttaaagccatcaggaagggcaaaat |
136 |
Q |
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| T |
25456552 |
aggccccttaaagccatcaggaagggcaaaat |
25456521 |
T |
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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 1966143 - 1966228
Alignment:
| Q |
51 |
gaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatatttactaaaatgccccttaaagccatcaggaagggcaaaat |
136 |
Q |
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| T |
1966143 |
gaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatatttactaaaatgccccttaaagccaccaggaagggcaaaat |
1966228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 21169166 - 21169204
Alignment:
| Q |
202 |
tgatttcactacaatacaaaagcattcatggatagactc |
240 |
Q |
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| T |
21169166 |
tgatttcaccacaatacaaaagcattcatggatagactc |
21169204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 21286651 - 21286689
Alignment:
| Q |
198 |
caattgatttcactacaatacaaaagcattcatggatag |
236 |
Q |
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| T |
21286651 |
caattgatttcactacaatacaaaatcattcatagatag |
21286689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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