View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_16 (Length: 364)
Name: NF0455_low_16
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 26744912 - 26745237
Alignment:
| Q |
10 |
gcacagatgcttacattgtttataggtataatttgcgtaagtaccataatcatatccataaaatttgacatggggtaagtgttggaagcgagtatttgaa |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26744912 |
gcacaaatgcttacattgtttataggtataatttgcgtaagtaccataatcatatccataaaatttgacatggggtaagtgttggaagcgagtatttgaa |
26745011 |
T |
|
| Q |
110 |
cttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26745012 |
cttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcgatcctgatataacctggaaggcacgaacactttc |
26745111 |
T |
|
| Q |
210 |
taccactacggaaattataactgcaaacgccattgggtccacaaatcccctgaatattacaagaacctatgcgaaattgcgctgataccgaccacttctc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26745112 |
taccactacggaaattataactgcaaacgccattgggtccacaaatcccctgaatattacaagaacctatacgaaattgcgctgataccgaccacttctc |
26745211 |
T |
|
| Q |
310 |
ttgtccatgttttcggctataaacac |
335 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
26745212 |
ttgtccatgttttcggctataaacac |
26745237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 26693902 - 26693747
Alignment:
| Q |
55 |
ataatcatatccataaaatttgacatggggtaagtgttggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcaccct |
154 |
Q |
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| T |
26693902 |
ataatcgtatccataaaaatcaacatggggtaagcgttggaagcgagtctttgattctgttttgttgttgcatgaaagttggaagcttggtttacaccct |
26693803 |
T |
|
| Q |
155 |
tggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttct |
210 |
Q |
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|| |||| |||||||||| |||||| ||||||| ||||| ||| ||||||||| |
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| T |
26693802 |
tgagaccaatcttgattattgatcctgttataaccaggaagacacacacactttct |
26693747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 331
Target Start/End: Original strand, 26676340 - 26676616
Alignment:
| Q |
55 |
ataatcatatccataaaatttgacatggggtaagtgttggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcaccct |
154 |
Q |
| |
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|||||||||||||||||| | ||||||||||| |||||||| ||| | | | |||| ||||| | ||||||||||||||| ||||||||||||| |
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| T |
26676340 |
ataatcatatccataaaactcaacatggggtaaacgttggaagtaagtctctaactttgttttgttattgcatgaaagttggaagtttggtttgcacccc |
26676439 |
T |
|
| Q |
155 |
tggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctaccactacggaaattataactgcaaacgccattgggtccacaaa |
254 |
Q |
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|| |||| | ||||||||| |||||| ||||||| |||| ||| |||||||||||||| | | ||||| | ||||||| | ||| |||||||||| |
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| T |
26676440 |
tgagaccaattttgattatcgatcctgctataaccgggaacacacaaacactttctaccagttcttggattattaatgcaaacactattaggtccacaaa |
26676539 |
T |
|
| Q |
255 |
tcccctgaatattacaagaacctatgcgaaattgcgctgataccgaccacttctcttgtccatgttttcggctataa |
331 |
Q |
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| || || || || ||| | | | |||||| |||| | ||||||||||||||||||||||||||| |||||| |
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| T |
26676540 |
ttccatgtattttgaaaggttgttggtggaattgccctgaaatcgaccacttctcttgtccatgttttcgactataa |
26676616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 26714743 - 26714844
Alignment:
| Q |
112 |
tgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttcta |
211 |
Q |
| |
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||||||||| | ||||||| |||||||||||||||||||||||| |||| ||||| |||| || || |||||||| |||| |||||||| |||||| |
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| T |
26714743 |
tgtcttgttattgcatgaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctagaagacacgaacattttcta |
26714842 |
T |
|
| Q |
212 |
cc |
213 |
Q |
| |
|
|| |
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|
| T |
26714843 |
cc |
26714844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 26737995 - 26738080
Alignment:
| Q |
128 |
gaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctacc |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||| |||| || || ||||||||||||| |||||||| |||||||| |
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| T |
26737995 |
gaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctacc |
26738080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 26689680 - 26689632
Alignment:
| Q |
125 |
catgaaagttggaagcttggtttgcacccttggaaccagtcttgattat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
26689680 |
catgaaagttggaagcttggtttgcacccttgtgaccaatcttgattat |
26689632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 333
Target Start/End: Original strand, 26699618 - 26699815
Alignment:
| Q |
136 |
gaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctaccactacggaaattataactgcaa |
235 |
Q |
| |
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||||||||||||||| ||||| ||||||| || || | || || ||||||||||||| |||||||| ||||||||| | | || |||||||||| |
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| T |
26699618 |
gaagcttggtttgcatccttgagaccagtcctggttgttgattatgctataacctggaagacacgaacattttctaccagttcttggatcataactgcaa |
26699717 |
T |
|
| Q |
236 |
acgccattgggtccacaaatcccctgaatattacaagaacctatgcgaaattgcgctgataccgaccacttctcttgtccatgttttcggctataaac |
333 |
Q |
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||| ||| |||||||||||||| || || | ||||| | | |||||| ||| ||| ||||| |||||||| |||||||||||||||||||| |
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| T |
26699718 |
gcgctattaggtccacaaatcccatgtatttgacaaggttgctggaggaattgccctgttactgaccaattctcttgcccatgttttcggctataaac |
26699815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 26689506 - 26689470
Alignment:
| Q |
299 |
gaccacttctcttgtccatgttttcggctataaacac |
335 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26689506 |
gaccacttctcttgtccgtgttttcggctataaacac |
26689470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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