View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_18 (Length: 351)
Name: NF0455_low_18
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 36253570 - 36253773
Alignment:
| Q |
27 |
gacaaaggtagtgcaaaggagcgattgaagaaggttgaggaggaggaggagaaggtggagacggtgaaaatggagagcctaggggacatgcatgaaaact |
126 |
Q |
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| T |
36253570 |
gacaaaggtagtgcaaaggagcgatcgaagaaggttgaggaggaggaggaggaggtggaggcggtgaaaatggagagcctaggggacatgcatgaaaact |
36253669 |
T |
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| Q |
127 |
agacacatgcatgtaggtattgtatcgtatctcattgcaaatgtaaaataaaagcatgatctctatcttcaataagataatcacttttcccttaaatcaa |
226 |
Q |
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| T |
36253670 |
agacacatgcatgtaggtattgtatcgtatctc-ttgcaaatgtaaaataaaagcatgatctctatcttcaataagataatcactttttccttaaatcaa |
36253768 |
T |
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| Q |
227 |
aatgt |
231 |
Q |
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||||| |
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| T |
36253769 |
aatgt |
36253773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 36254667 - 36254700
Alignment:
| Q |
224 |
caaaatgtctttcaaccattatcgtagattgtac |
257 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36254667 |
caaaatgtctttcaaccattatcgtagattgtac |
36254700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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