View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_19 (Length: 347)
Name: NF0455_low_19
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 100 - 266
Target Start/End: Complemental strand, 663922 - 663751
Alignment:
| Q |
100 |
catatttcaatgtaaccacatgtgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgaga |
194 |
Q |
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| T |
663922 |
catatttcaatgtaaccacatgtgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgaga |
663823 |
T |
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| Q |
195 |
aaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacct |
266 |
Q |
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| T |
663822 |
aaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacct |
663751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 908100 - 908183
Alignment:
| Q |
183 |
tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacct |
266 |
Q |
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| T |
908100 |
tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacct |
908183 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
| Q |
185 |
taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt |
229 |
Q |
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| T |
10157995 |
taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt |
10158039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
| Q |
184 |
ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga |
235 |
Q |
| |
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| T |
44605188 |
ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga |
44605137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
| Q |
184 |
ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt |
232 |
Q |
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|||||||||||||| |||||||||||||| ||| | |||||| |||||| |
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| T |
36314676 |
ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt |
36314628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
| Q |
187 |
atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga |
235 |
Q |
| |
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||||||||||| |||||| | |||||||| |||||||||||||||||| |
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| T |
40158456 |
atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga |
40158408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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