View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_2 (Length: 593)
Name: NF0455_low_2
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 29847737 - 29848309
Alignment:
| Q |
1 |
ggatgtttggttgttaaggaggacaattgaaacttaagcttgcaactaactttttattggggaacatgattttaaacaacggttaaggttacgatgcaaa |
100 |
Q |
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| T |
29847737 |
ggatgtttggttgttaaggaggacaattgaaacttaagcttgcaactaacttgttattggggaacatgattttaaaccaccgttaaggttacgatgcaaa |
29847836 |
T |
|
| Q |
101 |
cttttatattgcagaagaatgtagtcgatacggctgaaattaccgttgcaatatcgttgcaaaaactctaaaaagtttatactgcggcaatttcaaacta |
200 |
Q |
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| T |
29847837 |
cttttatattgcagcagaatgtagtcgatacggctgaaattaccgttgcgatatcgttgcaaaaactctaaaaagtttatactgcggcaatttcaaacta |
29847936 |
T |
|
| Q |
201 |
tgattggatagaaagacctaaaaaggacaatcaaaatcattgcttgactagtaaatatctccatggaaggttgatctcaactaattgaaaacatgagcga |
300 |
Q |
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| T |
29847937 |
tgattggatagaaagac-------------tcaaaatcattgcttgagtagtaaatatccccatggaatgttgatctcaactagttgaaaacatgagcgg |
29848023 |
T |
|
| Q |
301 |
agtgagtgtcttagaagcatacgactcttcgtccagtatttccaactagttcagatcaaccttgcatagagagagcatcattccaatattttaaggagga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29848024 |
agtgagtgtcttagaagcatacgactcttcgtccagtatttccaactagttcaaatcaaccttgcatagagagagtatcattccaatattttaaggagga |
29848123 |
T |
|
| Q |
401 |
aatttgtagagacaaaagcatgcgatggtttttaaaaatgcaaaacttgatatattttagggcacaaaaaatatattaatttagaccttaatatttttat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848124 |
aatttgtagagacaaaagcatgcgatggtttttaaaaatgcaaaacttgatatattttagggcacaaaaaatatattaatttagaccttaatatttttat |
29848223 |
T |
|
| Q |
501 |
agaaaaagtgttagtaagtaggtgattatgtctgtttttagaatttaaatctcccgataaaaaccccttcaacattgttcatctcac |
587 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29848224 |
ag-aaaagtgttagtaagtaggtgattatgtctgtttttagaatttaaatctcccgataaaaaccccttcaacattgttcaactcac |
29848309 |
T |
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