View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_21 (Length: 324)
Name: NF0455_low_21
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 35409955 - 35410209
Alignment:
| Q |
30 |
ctgggaataatcctaagtgtccatgatttttagttgacgtacatataaattcaattggacacgtatagtttggtttcaaatttgtcccacgtcgaagtaa |
129 |
Q |
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| T |
35409955 |
ctgggaataatcctaagtgtccatgatttttagttgacgtacatataaattcaattggacacgtatagtttggtttcaaatttgtcccacgtctaagtaa |
35410054 |
T |
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| Q |
130 |
tgtcttctagtttttgttacattcttttcttgtacgtaattaaagaattatttgtgttgtttccatccttgttttgtccactttggttgatattatgaat |
229 |
Q |
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| T |
35410055 |
tgtcttctagttcttgttacattctttccttgtacgtaattaaagaattatttgtgctgtttccatccttgttctgtccactttggaagatattgtgaat |
35410154 |
T |
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| Q |
230 |
tctgaacccaaaaacacatgatagggaatggcaattttgaatcatgttttatttcacc |
287 |
Q |
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| T |
35410155 |
tctgaaaccaaaa--acatgatagggaatggcaattttgaat-atgttttatttcacc |
35410209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 35410340 - 35410377
Alignment:
| Q |
287 |
cagaaggcctcaactatagctgcacgtaatacgcctaa |
324 |
Q |
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| T |
35410340 |
cagaaggcctcaactatagctgcacgtaatatgcctaa |
35410377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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