View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_25 (Length: 301)
Name: NF0455_low_25
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35973773 - 35973532
Alignment:
| Q |
1 |
tccactagatcgccgacagttgattccggcttcatcagcatctgaacgggaccaaggcttccaagaaccgtcactttcaaaagcaacttcggtggttgtc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35973773 |
tccactagatcgccgacagttgattccggtttcatcagcatctgaataggaccaaggcttccaagaaccgtcactttcaaaagcaacttcggtggttgtc |
35973674 |
T |
|
| Q |
101 |
taggaagaccttccgtcaccggaaggacgttgttccggtaagatagaagatcaggaacggtttttggacggcgaattgtagcagtggtcgtcataacgtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35973673 |
taggaagaccttccgtcaccggaaggacgttgttccggtaagatagaagatcaggaacggtttttggacggcgaattgtagcagtggtcgtcataacgtt |
35973574 |
T |
|
| Q |
201 |
gtttccgtgaaaagatgaagatctgtcgctcaaccttctctg |
242 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35973573 |
gtttccgtgaaaagatgaagatctctcgctcaaccttctctg |
35973532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 36253614 - 36253570
Alignment:
| Q |
243 |
ctcctcctcaaccttcttcaatcgctcctttgcactacctttgtc |
287 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36253614 |
ctcctcctcaaccttcttcgatcgctcctttgcactacctttgtc |
36253570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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