View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_28 (Length: 289)
Name: NF0455_low_28
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 3882638 - 3882811
Alignment:
| Q |
68 |
aatttttcaaccttcaaaaagtataatacatcaattttgagataatatttccttttataattctttgacaattgtcctacgaacacttgttaacattttc |
167 |
Q |
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| T |
3882638 |
aatttttcaaccttcaaaaagtataatacatcaattttgagataatatttccttttataattcttgaacaagtgtcccaggaacacttgttaacattttc |
3882737 |
T |
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| Q |
168 |
tttttaaaaataattatatgatatatacgtgacaacatattttaaaaataattaaataatcattcaagaattat |
241 |
Q |
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| T |
3882738 |
cttttaaaaataattatataatatatacgtgacaatatattttaaaaataattaaataatcattcaagaattat |
3882811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 32497828 - 32497887
Alignment:
| Q |
70 |
tttttcaaccttcaaaaagtataatacatcaatttt-gagataatatttccttttataatt |
129 |
Q |
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| T |
32497828 |
tttttaaactttcaaaaagtataataca-caattttcgagataatatttacttttataatt |
32497887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 5091851 - 5091754
Alignment:
| Q |
70 |
tttttcaaccttcaaaaagtataatacatcaatttt-gagataatatttccttttataattctttgacaattgtcctacgaacacttgttaacattttc |
167 |
Q |
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| T |
5091851 |
tttttcaactttcaaaaagtataataca-caattttcgaggtaagttttccttttataattccttaacaagtgccccgggggcacttgttaacattttc |
5091754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 38609169 - 38609104
Alignment:
| Q |
65 |
atcaatttttcaaccttcaaaaagtataatacatcaatttt-gagataatatttccttttataattc |
130 |
Q |
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|||| |||||||| |||||||||||| |||||| ||||||| |||| || ||||||||||||||||| |
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| T |
38609169 |
atcactttttcaagcttcaaaaagtaaaataca-caattttcgagaaaacatttccttttataattc |
38609104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 47750535 - 47750475
Alignment:
| Q |
70 |
tttttcaaccttcaaaaagtataatacatcaattttgagataatatttccttttataattc |
130 |
Q |
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|||||||| ||||||||||| |||||| | |||||||| ||||||||| |||||||||| |
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|
| T |
47750535 |
tttttcaagtttcaaaaagtaaaatacacaatttttgagaaaatatttccctttataattc |
47750475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 43143282 - 43143224
Alignment:
| Q |
70 |
tttttcaaccttcaaaaagtataatacatcaattttgagataatatttccttttataat |
128 |
Q |
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||||||||| |||||||||||||||||| || ||| || ||||||||||||| ||||| |
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| T |
43143282 |
tttttcaactttcaaaaagtataatacacaaaatttaaggtaatatttcctttaataat |
43143224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 27924549 - 27924481
Alignment:
| Q |
70 |
tttttcaaccttcaaaaagtataatacatcaattttgagataatatttccttttataattctttgacaa |
138 |
Q |
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||||| ||| ||||||||||| ||||||| | ||| ||||||||||| ||||| ||||||||| |||| |
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| T |
27924549 |
ttttttaactttcaaaaagtagaatacataattttcaagataatattttcttttctaattctttaacaa |
27924481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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