View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_30 (Length: 284)
Name: NF0455_low_30
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_30 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 98 - 284
Target Start/End: Original strand, 663261 - 663447
Alignment:
| Q |
98 |
atcatatttcaatgcagtgtttcaaaatgtggtaactttgattaaaaatttaacaagtatcatgtgagaatcaagaacaaaacatagaaagaacaacaat |
197 |
Q |
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| T |
663261 |
atcatatttcaatgcagtgtttcaaaatgtggtaactttgattaaaaatttaacaagtatcatgtgagaatcaagaacaaaacatagaaagaacaacaat |
663360 |
T |
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| Q |
198 |
gtaatctgtatattgttttaggaggcaatagtaaactgataacaacacaacgactcactgtttgatcaccagaagcagtgaggatct |
284 |
Q |
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| T |
663361 |
gtaatctgtatattgttttaggaggcaatagtaaactgagaacaacacaacaactcaccgtttgatcaccagaagcagtgaggatct |
663447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 117 - 284
Target Start/End: Complemental strand, 908640 - 908473
Alignment:
| Q |
117 |
tttcaaaatgtggtaactttgattaaaaatttaacaagtatcatgtgagaatcaagaacaaaacatagaaagaacaacaatgtaatctgtatattgtttt |
216 |
Q |
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|||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
908640 |
tttcaaaatgcggtaaatttgattcaaaatttaacaagtatcatgtgagaatcaagaacaaaacatagcaagaacaacaatgtaatctatatattgtttt |
908541 |
T |
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| Q |
217 |
aggaggcaatagtaaactgataacaacacaacgactcactgtttgatcaccagaagcagtgaggatct |
284 |
Q |
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| T |
908540 |
agcagacaatagtaaactgataacaacacaacgactcactgtttaaccaccagaagcagtgaggatct |
908473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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