View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_39 (Length: 251)
Name: NF0455_low_39
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 663225 - 663078
Alignment:
| Q |
94 |
attgcagagcttgttgaacaaacttaattgaaattcgagtcaatagttatcattttcatagcattgagttagaattggttttcaccataagatatagtat |
193 |
Q |
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| T |
663225 |
attgcagagcttgttgaacaaacttaattgaaattcgagtcaatagttatcattttcatagcattgagttagaattggttttcaccataagatatagtat |
663126 |
T |
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| Q |
194 |
tacatgtgtagtttccttgaagctgattttatactgaatgttcctatg |
241 |
Q |
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| T |
663125 |
tacatgtgtagtttccttgaagctgattttatactgaatgttcttatg |
663078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 663337 - 663261
Alignment:
| Q |
5 |
ttcttgattctcacatgatacttgttaaatttttaatcaaagttaccacattttgaaacactgcattgaaatatgat |
81 |
Q |
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| T |
663337 |
ttcttgattctcacatgatacttgttaaatttttaatcaaagttaccacattttgaaacactgcattgaaatatgat |
663261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 908583 - 908640
Alignment:
| Q |
5 |
ttcttgattctcacatgatacttgttaaatttttaatcaaagttaccacattttgaaa |
62 |
Q |
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| T |
908583 |
ttcttgattctcacatgatacttgttaaattttgaatcaaatttaccgcattttgaaa |
908640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 908705 - 908855
Alignment:
| Q |
94 |
attgcagagcttgttgaacaaacttaattgaaattc-gagtcaatagttatca-ttttcatagcattgagttagaattggttttcacc---------ata |
182 |
Q |
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| T |
908705 |
attgcagaacttgttgaacagacttaactgaaatacagagtcaatagttaccattttttttagcattgacttagaattggttttcatcatctttgtaatt |
908804 |
T |
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| Q |
183 |
agatatagtattacatgtgtagtttccttgaagctgattttatactgaatg |
233 |
Q |
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| T |
908805 |
agatatagtatcacatgagtagtttcctttaagctggttttatattgaatg |
908855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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