View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_4 (Length: 554)
Name: NF0455_low_4
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_4 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 90 - 531
Target Start/End: Original strand, 54572 - 55013
Alignment:
| Q |
90 |
atatttaggtaagtttccactttcattcagatttaatgtcacaaactcttcctactctcatctggatttcaggtttcagtgccacatgacaccttgttct |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54572 |
atatttaggtaagtttccactttcattcagatttaatgtcacaaactcttcctactctcatctggatttcaggtttcagtgccacatgacaccttgttct |
54671 |
T |
|
| Q |
190 |
aaactgaatcgaattggccttgttttaaactgatgtaaccttaccttcttagagtctacacctttctatggccatctctacacatgaatctaaccaaggc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54672 |
aaactgaatcgaattggccttgttttaaactgatgtaatcttaccttcttagagtctacacctttctatggccatctctacacatgaatctaaccaaggc |
54771 |
T |
|
| Q |
290 |
actttaggtatttatcttgtctcacttaagtatattgatctagtaatgcacggtgtttgagataattctgctcatccccatcccttccagtctatggttg |
389 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54772 |
actttatgtatttatcttgtctcacttaagtatattgatctagtaatgcccggtgtttgagataattctgctcatccccatcccttccagtctatggttg |
54871 |
T |
|
| Q |
390 |
tctccagcctcatctacagcacccaagtctctacctcaatcacatgtgccttcatctccaacacatatgcctccacctctaccactgatgcctccattta |
489 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54872 |
tctccagcctcatctacagcacccatgtctctacctcaatcacatgtgccttcatctccaacacatatgcctccacctctaccactgatgcctccattta |
54971 |
T |
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| Q |
490 |
caacttttatggaatctcttgcagctccatctccctcctctg |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
54972 |
caacttttatggaatctcttgcagctccatctccctcctctg |
55013 |
T |
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