View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0455_low_5 (Length: 504)
Name: NF0455_low_5
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 498
Target Start/End: Original strand, 38752457 - 38752925
Alignment:
| Q |
30 |
ttattcacaaagaatacactaggtttgattagagagttcagccaattgtgcctacgtatccgactataaagtggttgtaatatttttccattaatcaaat |
129 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
38752457 |
ttattcacaatgaatacactaggtttgattagagagttcggccaattgtgcctacgtatccgactacaaagtggttgtaatatttttccattagtcaaat |
38752556 |
T |
|
| Q |
130 |
ttaggattgcatatatattacaaattttgtttaaatactacggtccaatttacatgattatatctgatcagtagacaacttatgtttaaatactacagtc |
229 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38752557 |
ttcggattgcatatatattacaaattttatttaaatactacggtccaatttacatgattatatctgatcagtagacaacttgtgtttaaatactacagtc |
38752656 |
T |
|
| Q |
230 |
caatttataagattatctctgatcaataaacttatctatttaccggtaaactatgagtcatacccaacattttcacattataattttactctatgaaaca |
329 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752657 |
caatttacaagattatctctgatcaataaacttgtctatttaccggtaaactatgagtcatacccaacattttcacattataattttactctatgaaaca |
38752756 |
T |
|
| Q |
330 |
aaaatatatgacatatcatttaagtaactcttcttttggctatctaaatagtttactaactttaagaagcatatgaccatgtcagtacaaacaatgagtt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752757 |
aaaatatatgacatatcatttaagtaactcttcttttggctatctaaatagtttactaactttaagaagcatatgaccatgtcagtacaaacaatgagtt |
38752856 |
T |
|
| Q |
430 |
tttgtaggataaactataataagatccaatgagtctattaattagttatttgattgttctctctgctgc |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752857 |
tttgtaggataaactataataagatccaatgagtctattaattagttatttgattgttctctctgctgc |
38752925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 10842645 - 10842682
Alignment:
| Q |
144 |
atattacaaattttgtttaaatactacggtccaattta |
181 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||| |
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| T |
10842645 |
atattacaatttgtgtttaaatactacggtccaattta |
10842682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 38779482 - 38779442
Alignment:
| Q |
204 |
acaacttatgtttaaatactacagtccaatttataagatta |
244 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
38779482 |
acaacttgtgtttaaatactacagtccagtttacaagatta |
38779442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 34655354 - 34655396
Alignment:
| Q |
147 |
ttacaaattttgtttaaatactacggtccaatttacatgatta |
189 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
34655354 |
ttacaaatttactttaaatgctacggtccaatttacatgatta |
34655396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 37410026 - 37410071
Alignment:
| Q |
144 |
atattacaaattttgtttaaatactacggtccaatttacatgatta |
189 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||| ||||| |
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|
| T |
37410026 |
atattacaatttgtttttaaatactacggtccaatttacaagatta |
37410071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 4999915 - 4999955
Alignment:
| Q |
204 |
acaacttatgtttaaatactacagtccaatttataagatta |
244 |
Q |
| |
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||||||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
4999915 |
acaacttatatttaaatactacggtccaatttacaagatta |
4999955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 34358094 - 34358054
Alignment:
| Q |
207 |
acttatgtttaaatactacagtccaatttataagattatct |
247 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||| |
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|
| T |
34358094 |
acttatgtttaaatgctacagttcaatttacaagattatct |
34358054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 37855033 - 37855001
Alignment:
| Q |
214 |
tttaaatactacagtccaatttataagattatc |
246 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
37855033 |
tttaaatactacggtccaatttataagattatc |
37855001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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