View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0455_low_8 (Length: 438)
Name: NF0455_low_8
Description: NF0455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0455_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 2298491 - 2298774
Alignment:
| Q |
11 |
caaaggaggcacagtcacatttacacacatttctaattttttacgtctcaactatttaaaaaagaatatatactctacgtatactttacgttatttgaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2298491 |
caaaggaggcacagtcacatttacacacatttctaattttttacgtctcaactatttaaaaaagaatatatactctacgtatactttacgttatttgaaa |
2298590 |
T |
|
| Q |
111 |
tgattt-atttgtttattgaatacagcaacaatacaataatccaagatgccaaatactataaatgttcaattagtctttatacttcacttggctcaaaac |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2298591 |
tgattttatttgtttattgaatacagcaacaatacaataatccaagatgccaaatactataaatgttcaattagtctttatacttcacttggctcaaaac |
2298690 |
T |
|
| Q |
210 |
tatgatattctacgagttttagggatctgggttgtgtgttcagtcacaatttcgtgattatacaaccaatcaatttaaactgtc |
293 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2298691 |
tatgttattctacgagttttagggatctgggttgtgtgttcagtcacaatttcgtgattatacaaccaatcaatttaaactgtc |
2298774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 2298820 - 2298931
Alignment:
| Q |
296 |
aagaatcaaaatttgtattgaaatttagatatgactcattgcgtgcagtcacactacacacaatccaaatcggagttttagataccctatatacctcaca |
395 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2298820 |
aagaataaaaatttgtattgaaatttagatgtgactcattgcgtgcagtcacactacacacaatccaaatcggagttttagataccctatatacct--ca |
2298917 |
T |
|
| Q |
396 |
ctctgtgtaggctc |
409 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2298918 |
ctctgtgtaggctc |
2298931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 2323044 - 2323147
Alignment:
| Q |
296 |
aagaatcaaaatttgtattgaaatttagatatgactcattgcgtg-cagtcacactacacacaatccaaatcggagt----tttagataccctatatacc |
390 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||| || ||| | |||||||||||||||||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
2323044 |
aagaatcaaaatatgtattgaaatttagatgtgagtcactgagtgcctctcacactacacacaatccaaatcgaagtttgatttagataccctatacacc |
2323143 |
T |
|
| Q |
391 |
tcac |
394 |
Q |
| |
|
|||| |
|
|
| T |
2323144 |
tcac |
2323147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 2322865 - 2322937
Alignment:
| Q |
174 |
gttcaattagtctttatacttcacttggctcaaaactatgatattctacgagttttagggatctgggttgtgtg |
247 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||||||| || |||||| ||| ||| ||||||| |
|
|
| T |
2322865 |
gttcaattagt-tttatactttacttggctcaaaactaagatattctatgatttttagagatttggattgtgtg |
2322937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 2322643 - 2322685
Alignment:
| Q |
97 |
tacgttatttgaaatgattta-tttgtttattgaatacagcaa |
138 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2322643 |
tacgctatttgaaatgatttaatttgtttattgaatacagcaa |
2322685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1331 times since January 2019
Visitors: 3228