View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0456_high_5 (Length: 341)
Name: NF0456_high_5
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0456_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 32289800 - 32290105
Alignment:
| Q |
30 |
tgaatctcactcaatattcctttcccttcttcaattaacacattcacaacaatggatctactcaaccaatacaccgacaacaacaacgatccagactcac |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32289800 |
tgaatctcactcaatattcctttcccttcttcaattaacacattcacaacaatggatctactcaaccaatacaccgacaacaacaacgatccagactcac |
32289899 |
T |
|
| Q |
130 |
catctcaaaaccctaattcaccggaaaattctccaccccgtctcctcccttcccgttccgccgcccccaaagtagacgacaccatgctcgctctaaccgt |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32289900 |
catctcaaaaccctaattcaccggaaaattctccaccccgtctcctcccttcccgttccgccgcccccaaagtagacgacaccatgctcgctctaaccgt |
32289999 |
T |
|
| Q |
230 |
cgccgaccccaaaaccctctccaaacccatcgacccaactcaacaccttatcgccttcaaccctacctacgaccagctctgggccccgattcaaggttca |
329 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32290000 |
cgccgaccccaaaaccctctccaaacccatcgacccaactcaacaccttatcgccttcaaccctacctacgaccagctctgggccccgattcaaggtcca |
32290099 |
T |
|
| Q |
330 |
tctcac |
335 |
Q |
| |
|
|||||| |
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|
| T |
32290100 |
tctcac |
32290105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 75 - 335
Target Start/End: Complemental strand, 42494877 - 42494614
Alignment:
| Q |
75 |
acaacaatggatctactcaaccaatacaccgacaacaacaac---gatccagactcaccatctcaaaaccctaattcaccggaaaattctccaccccgtc |
171 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
42494877 |
acaacaatggatctactcaaccaatactccgacaacaacaacagcgatccaggttcaccaactcaaaaccctaattcaccggaaaattctccaacccgtc |
42494778 |
T |
|
| Q |
172 |
tcctcccttcccgttccgccgcccccaaagtagacgacaccatgctcgctctaaccgtcgccgaccccaaaaccctctccaaacccatcgacccaactca |
271 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42494777 |
tcctcccatcccgttctgccgcccctaaagttgacgacaccatgctcgccctaaccgttgccgaccccaaaaccctctccaaacccatcgacccaactca |
42494678 |
T |
|
| Q |
272 |
acaccttatcgccttcaaccctacctacgaccagctctgggccccgattcaaggttcatctcac |
335 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
42494677 |
acacctcgtcgccttcaaccctacctacgaccaactctgggcccccattcaaggcccatctcac |
42494614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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