View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0456_low_12 (Length: 315)
Name: NF0456_low_12
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0456_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28963478 - 28963261
Alignment:
| Q |
1 |
tttctgtgatcatagacgtatttttcccgtgtgaaatctgttacattctgtgtcggtttgtatgtacgtgtctgaaattttacatagctttaagaacact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28963478 |
tttctgtgatcatagacgtatttttcccgtgtgaaatctgttacattctgtgtcggtttgtatgtacgtgtctgaaattttacatagctttaagaacact |
28963379 |
T |
|
| Q |
101 |
caaatttgacactgcagctgaactttcaacacacaagacacatatgctctaaagaggtgaaacgtccaaccaagaagaatcaggttgccccatctccact |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28963378 |
caaatttgacactgcagctgaactttcaacacacaagacacatatactctaaagaggtgaaacgtccaaccaagaagaatcaggttgccccatctccact |
28963279 |
T |
|
| Q |
201 |
cttacccaccaccctttt |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
28963278 |
cttacccaccaccctttt |
28963261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34834790 - 34834573
Alignment:
| Q |
1 |
tttctgtgatcatagacgtatttttcccgtgtgaaatctgttacattctgtgtcggtttgtatgtacgtgtctgaaattttacatagctttaagaacact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34834790 |
tttctgtgatcatagacgtatttttcccgtgtgaaatctgttacattctgtgtcggtttgtatgtacgtgtctgaaattttaaatagctttaagaacact |
34834691 |
T |
|
| Q |
101 |
caaatttgacactgcagctgaactttcaacacacaagacacatatgctctaaagaggtgaaacgtccaaccaagaagaatcaggttgccccatctccact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34834690 |
caaatttgacactgcagctgaactttcaacacacaagacacatatactctaaagaggtgaaacgtccaaccaagaagaatcaggttgccccatctccact |
34834591 |
T |
|
| Q |
201 |
cttacccaccaccctttt |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
34834590 |
cttacccaccaccctttt |
34834573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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