View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0456_low_2 (Length: 608)

Name: NF0456_low_2
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0456_low_2
NF0456_low_2
[»] chr2 (4 HSPs)
chr2 (46-448)||(10043581-10043977)
chr2 (82-448)||(10105295-10105655)
chr2 (500-583)||(10105182-10105265)
chr2 (500-583)||(10043468-10043551)
[»] scaffold0635 (2 HSPs)
scaffold0635 (82-448)||(3129-3489)
scaffold0635 (500-583)||(3519-3602)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 46 - 448
Target Start/End: Complemental strand, 10043977 - 10043581
Alignment:
Q  46 tgtcaaattaattgtttagctttaggaatatatatatttggattggtatgtaatgcaatgaaatggaaatttataaaataaaatgagaatagttgagtga 145  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  10043977 tgtcaaatttaatgtttagctttaggaatatatatttttggattggtatgtaatgcaatgaaatgaaaatttataaaatagaatgagcatagttgagtga 10043878  T
Q  146 aatgaaacatagatcagactctatattctatnnnnnnnnttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattcta 245  Q
    |||||||||||||||||||||| | || ||         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10043877 aatgaaacatagatcagactct-tctttta----ataaattatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattcta 10043783  T
Q  246 ttacataannnnnnnaaaatattcgaacaattgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatat 345  Q
    ||||||||       ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10043782 ttacataatttttt-aaaatattcaaacagttgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatat 10043684  T
Q  346 ggtgcttcacacctaaagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaactcttatttttcccttc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10043683 ggtgcttcacacctaaagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaattcttatttttcccttc 10043584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 82 - 448
Target Start/End: Complemental strand, 10105655 - 10105295
Alignment:
Q  82 tttggattggtatgtaatgcaatgaaatggaaatttataaaataaaatgagaatagttgagtgaaatgaaacatagatcagactctatattctatnnnnn 181  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | || ||          
T  10105655 tttggattggtatgtaatgcaatgaaatgaaaatttataaaatagaatgagcatagttgagtgaaatgaaacatagatcagactct-tctttta----at 10105561  T
Q  182 nnnttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaat 281  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||| ||||||    
T  10105560 aaattatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaat 10105462  T
Q  282 atcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatga 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10105461 atcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatga 10105362  T
Q  382 aattttaacatttatgaaatgagaataaccaaagttgaaagaagcaactcttatttttcccttcttt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10105361 aattttaacatttatgaaatgagaataaccaaagttgaaagaagcaattcttatttttcccttcttt 10105295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 500 - 583
Target Start/End: Complemental strand, 10105265 - 10105182
Alignment:
Q  500 ctccacattttctggagaaaacatcataaaataattctcttactttcctgccaagcttgcctgcaccactccccatttgttgat 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10105265 ctccacattttctggagaaaacatcataaaataattctcttactttcttgccaagcttgcctgcaccactccccatttgttgat 10105182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 500 - 583
Target Start/End: Complemental strand, 10043551 - 10043468
Alignment:
Q  500 ctccacattttctggagaaaacatcataaaataattctcttactttcctgccaagcttgcctgcaccactccccatttgttgat 583  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10043551 ctccacattttccggagaaaacatcataaaataattctcttactttcttgccaagcttgcctgcaccactccccatttgttgat 10043468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 82 - 448
Target Start/End: Original strand, 3129 - 3489
Alignment:
Q  82 tttggattggtatgtaatgcaatgaaatggaaatttataaaataaaatgagaatagttgagtgaaatgaaacatagatcagactctatattctatnnnnn 181  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | || ||          
T  3129 tttggattggtatgtaatgcaatgaaatgaaaatttataaaatagaatgagcatagttgagtgaaatgaaacatagatcagactct-tctttta----at 3223  T
Q  182 nnnttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaat 281  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||| ||||||    
T  3224 aaattatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaat 3322  T
Q  282 atcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatga 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3323 atcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatga 3422  T
Q  382 aattttaacatttatgaaatgagaataaccaaagttgaaagaagcaactcttatttttcccttcttt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3423 aattttaacatttatgaaatgagaataaccaaagttgaaagaagcaattcttatttttcccttcttt 3489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 500 - 583
Target Start/End: Original strand, 3519 - 3602
Alignment:
Q  500 ctccacattttctggagaaaacatcataaaataattctcttactttcctgccaagcttgcctgcaccactccccatttgttgat 583  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3519 ctccacattttccggagaaaacatcataaaataattctcttactttcttgccaagcttgcctgcaccactccccatttgttgat 3602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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