View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0456_low_22 (Length: 250)

Name: NF0456_low_22
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0456_low_22
NF0456_low_22
[»] chr3 (27 HSPs)
chr3 (46-235)||(18165773-18165962)
chr3 (46-223)||(19464970-19465147)
chr3 (41-240)||(19437570-19437769)
chr3 (41-240)||(18147442-18147641)
chr3 (41-235)||(19414796-19414990)
chr3 (109-240)||(17942634-17942765)
chr3 (41-240)||(19376234-19376433)
chr3 (46-233)||(25463667-25463854)
chr3 (41-240)||(19334621-19334820)
chr3 (41-235)||(18873072-18873266)
chr3 (42-214)||(18109052-18109224)
chr3 (45-240)||(18103962-18104157)
chr3 (42-214)||(17950445-17950617)
chr3 (41-235)||(19393761-19393955)
chr3 (109-240)||(19381573-19381704)
chr3 (116-214)||(19400413-19400511)
chr3 (116-233)||(14895586-14895703)
chr3 (114-235)||(16677895-16678016)
chr3 (110-240)||(19352073-19352203)
chr3 (110-235)||(19354396-19354521)
chr3 (144-232)||(19439359-19439447)
chr3 (110-240)||(18016703-18016833)
chr3 (42-235)||(17726731-17726924)
chr3 (109-214)||(18116645-18116750)
chr3 (42-235)||(19027960-19028153)
chr3 (51-211)||(19425309-19425469)
chr3 (109-214)||(19461867-19461974)
[»] chr4 (2 HSPs)
chr4 (41-240)||(15536145-15536344)
chr4 (41-235)||(2709782-2709976)
[»] scaffold0274 (2 HSPs)
scaffold0274 (109-240)||(21304-21434)
scaffold0274 (46-240)||(2762-2956)
[»] scaffold0648 (1 HSPs)
scaffold0648 (46-240)||(3293-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (46-240)||(6020-6214)
[»] chr8 (1 HSPs)
chr8 (48-214)||(8460164-8460330)
[»] chr6 (1 HSPs)
chr6 (82-240)||(13666139-13666297)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 18165773 - 18165962
Alignment:
Q  46 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 145  Q
    ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18165773 tgtggagtaataggctatttggtgaagtttcattgcacttctccgatttgaaccaattggaaatcatgaacttgggagaaaatgaattttctggaaccat 18165872  T
Q  146 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
    ||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||    
T  18165873 accaattttgatttcacaaaagttagaagtggtcatattgagagctaaccaatttgaagggactattccaccacaaatattcaatctctc 18165962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 19464970 - 19465147
Alignment:
Q  46 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 145  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||||||||||    
T  19464970 tgtggagtaataggctatctggtgaagtttcgttgcacttctctaatttgaaccaattggaaaacatgaacttgggcgaaaatgaattttctggaaccat 19465069  T
Q  146 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaact 223  Q
    ||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  19465070 acctatcttgatttcacaagacttagaagtggtcatattgagagctaaccaatttgaagggactattccaccacaact 19465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 19437570 - 19437769
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    ||||||||||||||||||| | ||||| ||| || ||||| ||||||||||   ||| ||||||  || ||||||||| |||||||||||||||||||||    
T  19437570 gaacctgtggagtaataggttgtcaggggaacttccattgtacttctctaaccggaaacaattggaaaccatgaacttaggagaaaatgaattttctgga 19437669  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||    
T  19437670 accataccaatcatgatgtcacaaaacttaaaagtggtcatattgagagctaataaatttgaagggactattccgcaacaactattcaatctctcttatt 19437769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 18147442 - 18147641
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    ||||||||||||||||||| | || || ||| || ||||| |||||||| | | ||| ||||||  |||||||||||| |||||||||||||||||||||    
T  18147442 gaacctgtggagtaataggttgtctggggaacttccattgtacttctcttactggaaacaattggaaatcatgaacttaggagaaaatgaattttctgga 18147541  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||| |||||||| ||||| ||||| ||||    
T  18147542 accataccaatcatgatgtcacaaaacttactagtggtcatattgagagctaataaatttgaagggactattccacaacaactattcaacctctcttatt 18147641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 19414796 - 19414990
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||| ||||  || ||| ||||| ||| ||||||| ||||||||||||||||||| ||||    
T  19414796 gaacctgtggagtaataggctatctggtgaagttcctttgtactgctctggttggaagcaattaagagtcatgaatttgggagaaaatgaattttatgga 19414895  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||| || || ||||||||    
T  19414896 accataccaatcatgatgtcacagaacttagaagtggtcatattgagagataaccgatttgaagggactattccaccacagctatttaatctctc 19414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 17942634 - 17942765
Alignment:
Q  109 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 208  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||   | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17942634 tcatgaatttgggagaaaatgagttttttggaaccataccaatcagcttatcacaaaacttacaagtggtcatattgagagctaaccaatttgaagggac 17942733  T
Q  209 tattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||||||||| ||||||||||||||||    
T  17942734 tattccgcaacaactattcaatctctcctatt 17942765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 19376234 - 19376433
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    |||||| ||||||||||||||||| |||||||||  |   ||| |||||  ||  || ||||||  | || |||| ||||||||||||||||||||||||    
T  19376234 gaacctatggagtaataggctatctggtgaagttctagctcacctctctgcttcaaatcaattgcaattcttgaatttgggagaaaatgaattttctgga 19376333  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||| ||||    
T  19376334 accataccaatcaagatgtcacaaaacttatatttggtcatattgagagctaataaatttgaagggactattccacaacaactattcaatctctcttatt 19376433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 25463667 - 25463854
Alignment:
Q  46 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 145  Q
    |||||| |||||||||||| |||||||||  | | ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||||||||||    
T  25463667 tgtggaataataggctatctggtgaagttctagtacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctggaaccat 25463766  T
Q  146 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctc 233  Q
    |||||| |  ||| ||| | ||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||| |||||||||    
T  25463767 accaatgaacatgccactatacttagaagtggtcatattgagagcaaaccaatttgaagggaatattccaccacaactattcaatctc 25463854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 19334621 - 19334820
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    |||||| |||||||||||||| || |||||||||  |  |||  ||||| ||| ||| ||||||||| |||| || ||||||||||||||||||||||||    
T  19334621 gaacctatggagtaataggctgtctggtgaagttcaagagcatctctctgattggaaacaattgagagtcataaatttgggagaaaatgaattttctgga 19334720  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    | ||||||||    |||||||||||||||| || || ||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| ||||    
T  19334721 agcataccaacagggatgtcacaaaacttacaactgatcatattgagagccaatcaatttgaagggactattccacaacaactattcaatctctcttatt 19334820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 18873266 - 18873072
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    |||||||||||||||||||||||| |||||||||  |   ||| ||||| | | ||| || |||   ||| |||| ||||||||||||||||||||||||    
T  18873266 gaacctgtggagtaataggctatctggtgaagttcaagatcacctctctgaatggaaacagttgcagatcttgaatttgggagaaaatgaattttctgga 18873167  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
    | ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| | | |||||| || ||||||||    
T  18873166 aacataccattcatgatgtcacaaaacctagaagtagtcatattgagagctaaccaatttgaagggaatatttcaccacaactatttaatctctc 18873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 18109052 - 18109224
Alignment:
Q  42 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 141  Q
    ||||| ||||||||||||||||| |||||||||  |   ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||| ||    
T  18109052 aacctttggagtaataggctatctggtgaagttctaggacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctgcaa 18109151  T
Q  142 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattcc 214  Q
    | ||||||||||   | |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18109152 caataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaatttgaaggaactattcc 18109224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 18103962 - 18104157
Alignment:
Q  45 ctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaacca 144  Q
    ||||||||||||||| | || ||  || || ||||| |||||||||| ||||| ||||||   | ||||||| | ||||||||||||||||||||||| |    
T  18103962 ctgtggagtaataggttgtcggggaaacttccattgtacttctctaacttgaaacaattgcagaccatgaacgtaggagaaaatgaattttctggaacta 18104061  T
Q  145 taccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||| |    ||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||| ||||||||| ||||||||||| ||||    
T  18104062 taccagtaggtatgtcacaaaacttagaagtgatcatattgagagccaatcaatttgaagggacaattctgcaacaactattcaatctctcttatt 18104157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 17950445 - 17950617
Alignment:
Q  42 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 141  Q
    ||||| ||||||||||||||||| |||||||||  |   ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||| ||    
T  17950445 aacctttggagtaataggctatctggtgaagttctaggacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctgcaa 17950544  T
Q  142 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattcc 214  Q
    | ||||||||||   | |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  17950545 caataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaattagaaggaactattcc 17950617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 19393761 - 19393955
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    |||||| |||||||||| ||| || ||||||||| ||||  || ||||| ||| ||  ||||||   |||||||| |||||| |||||||||||||||||    
T  19393761 gaacctatggagtaataagctgtctggtgaagttccattaaacctctctgattggagacaattgcagatcatgaatttgggaaaaaatgaattttctgga 19393860  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
    | ||||||| |   |||| |||||||||||| |||||||||||||||||| || ||||||||||| |||||||| |||||||| |||||| ||||    
T  19393861 aacataccagttgggatgccacaaaacttagtagtggtcatattgagagccaatcaatttgaaggtactattccacaacaactattcaatatctc 19393955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 19381573 - 19381704
Alignment:
Q  109 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |   | ||| ||||||||||| | |||||||||||||||||||||||||||||||     
T  19381573 tcatgaatttgggagaaaatgaattttctggaaccataccaatgaacttatcagaaaacttagaaattgtcatattgagagctaaccaatttgaagggaa 19381672  T
Q  209 tattccgcaacaactgttcaatctctcctatt 240  Q
    |||||| | |||| | ||||||||||| ||||    
T  19381673 tattccaccacaattattcaatctctcttatt 19381704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 19400413 - 19400511
Alignment:
Q  116 cttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattcc 214  Q
    ||||||||||||||||||||| ||||||||||||||||   | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  19400413 cttgggagaaaatgaattttcgggaaccataccaatcaacttttcacaaaacttagaagttgtcatactgagagctaaccaatttgaagggactattcc 19400511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 14895703 - 14895586
Alignment:
Q  116 cttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccg 215  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||| ||||||     
T  14895703 cttgggagaaaatgaattttatggaactataccaaccatgatgtcacaatacttacaagtggttatattgagatctaaccaatttgaagggaatattcca 14895604  T
Q  216 caacaactgttcaatctc 233  Q
    | |||| | |||||||||    
T  14895603 ccacaattattcaatctc 14895586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 16677895 - 16678016
Alignment:
Q  114 aacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 213  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||| |||||||| | |||||    
T  16677895 aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc 16677994  T
Q  214 cgcaacaactgttcaatctctc 235  Q
    | | |||  | |||||||||||    
T  16677995 cactacagttattcaatctctc 16678016  T

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Target: chr3; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 19352073 - 19352203
Alignment:
Q  110 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggact 209  Q
    |||||||||||||||||||||||||||||||| ||||||  |   ||||||||||||||||| |||||||||||| ||||| ||  |||||||||||| |    
T  19352073 catgaacttgggagaaaatgaattttctggaaacataccggtagggatgtcacaaaacttagtagtggtcatatttagagccaataaatttgaagggatt 19352172  T
Q  210 attccgcaacaactgttcaatctctcctatt 240  Q
    ||||| |||||| | ||||||||||| ||||    
T  19352173 attccacaacaattattcaatctctcttatt 19352203  T

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Target: chr3; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 19354396 - 19354521
Alignment:
Q  110 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggact 209  Q
    ||||||||||||||  || |||||||||||||||||||||||||  |||||||||  ||||  |||||||||||||||||| |||||||||||||||| |    
T  19354396 catgaacttgggagctaacgaattttctggaaccataccaatcaaaatgtcacaatccttaacagtggtcatattgagagccaaccaatttgaagggaat 19354495  T
Q  210 attccgcaacaactgttcaatctctc 235  Q
    || || |||||||| || ||||||||    
T  19354496 atcccacaacaactatttaatctctc 19354521  T

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Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 19439359 - 19439447
Alignment:
Q  144 ataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatct 232  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||||||    
T  19439359 ataccaatcatgatgtcacaaaacttaggagtggtaatattgagagataaccaatttgaaggaactattccacaacaactattcaatct 19439447  T

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Target: chr3; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 18016703 - 18016833
Alignment:
Q  110 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggact 209  Q
    ||||||||||||| |||||||||||||||||| ||||||| |   ||||||||||||||||  |||||||||||||||||| ||  |||||||||||| |    
T  18016703 catgaacttgggaaaaaatgaattttctggaaacataccagtagggatgtcacaaaacttaagagtggtcatattgagagccaataaatttgaagggatt 18016802  T
Q  210 attccgcaacaactgttcaatctctcctatt 240  Q
    ||||| | |||| | ||||||||||| ||||    
T  18016803 attccacgacaattattcaatctctcttatt 18016833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 17726924 - 17726731
Alignment:
Q  42 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 141  Q
    ||||| |||||||||||||| || |||||||||  |   ||| ||||| ||||||| ||||||  |  ||| |  |||||||||||||||||||||||||    
T  17726924 aacctatggagtaataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaa 17726825  T
Q  142 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
     ||||||| |   |||||||||| |||||||| ||||||||||| ||| ||| || ||||||||| |||||||   |||||| |||||||||||    
T  17726824 acataccagtagagatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattcctgcacaactattcaatctctc 17726731  T

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Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 18116645 - 18116750
Alignment:
Q  109 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 208  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||| | |||||||| |||||| |||||| |||||||||||||||||     
T  18116645 tcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtagtcatactgagaggtaaccaatttgaagggag 18116744  T
Q  209 tattcc 214  Q
    ||||||    
T  18116745 tattcc 18116750  T

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Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 19028153 - 19027960
Alignment:
Q  42 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 141  Q
    ||||| |||||||||||||| || |||||||||  |   ||| ||||| ||||||| ||||||  |  ||| |  |||||||||||||||||||||||||    
T  19028153 aacctatggagtaataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaa 19028054  T
Q  142 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
     ||||||| |   |||||||||| |||||||| ||||||||||| ||| ||| || ||||||||| |||||||   |||||| |||||||||||    
T  19028053 acataccagtagagatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattcctgcacaactattcaatctctc 19027960  T

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Target: chr3; HSP #26
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 19425309 - 19425469
Alignment:
Q  51 agtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccataccaa 150  Q
    ||||||| ||||||  ||||||||  |  |||| ||||| ||| ||| ||||||   |||||||  |||||||||||| ||||||| |||| ||||||||    
T  19425309 agtaataagctatcctgtgaagttatacagcacctctctgattggaaacaattgcagatcatgattttgggagaaaataaattttcaggaatcataccaa 19425408  T
Q  151 tcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactat 211  Q
    | |   | |||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  19425409 tgaacttatcacaaaaattagaagtcgtcatattgagagctaaccaatttgaagggactat 19425469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 19461867 - 19461974
Alignment:
Q  109 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatat--tgagagctaaccaatttgaaggg 206  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||| | ||||||||  ||||||  |||||| ||||||||||||||||    
T  19461867 tcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtattcatatactgagaggtaaccaatttgaaggg 19461966  T
Q  207 actattcc 214  Q
    | ||||||    
T  19461967 agtattcc 19461974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 15536145 - 15536344
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    ||||||||||| ||||||  | || ||||||||| || ||||| |||||  || ||| ||||||  || |||||||||||||||||||||||||||||||    
T  15536145 gaacctgtggaataatagtttgtctggtgaagttccaatgcacctctctgcttcgaaacaattgcaaaccatgaacttgggagaaaatgaattttctgga 15536244  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||  |||||||||||| |||||||| |||| | ||||||||||| ||||    
T  15536245 accataccaatcatgatgtcacaaaacttagtagtggtcatattgagaaccaataaatttgaagggattattccgccacaattattcaatctctcttatt 15536344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 2709976 - 2709782
Alignment:
Q  41 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 140  Q
    |||| ||||||||||||  ||||| ||||||||| || ||||| ||||||||| | |   ||||  |  ||||||| | |||||||||||||||||||||    
T  2709976 gaacttgtggagtaataaactatctggtgaagttccaatgcacctctctaattggtatggattgcaagccatgaacctaggagaaaatgaattttctgga 2709877  T
Q  141 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctc 235  Q
    || |||||||||| |||||| ||| | ||  ||||  ||||||||||||||||||||||| |||||||||||||   |||| | |||||||||||    
T  2709876 actataccaatcaagatgtcgcaagatttgaaagttctcatattgagagctaaccaatttaaagggactattccaacacaattattcaatctctc 2709782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 21304 - 21434
Alignment:
Q  109 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 208  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||  ||| ||||| | ||||||||||||||||| |||||||||||||| ||| ||||    
T  21304 tcatgaatttgggagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagtggtcatattaagagctaaccaattcgaa-ggac 21402  T
Q  209 tattccgcaacaactgttcaatctctcctatt 240  Q
    |||||| | |||| | ||||||||||| ||||    
T  21403 tattccaccacaattattcaatctctcttatt 21434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 2956 - 2762
Alignment:
Q  46 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 145  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  2956 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 2857  T
Q  146 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| ||||||||||||||   |||| | ||||||||||| ||||    
T  2856 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattccatcacaattattcaatctctcttatt 2762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 3487 - 3293
Alignment:
Q  46 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 145  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  3487 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 3388  T
Q  146 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| ||||||||||||||   |||| | ||||||||||| ||||    
T  3387 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattccatcacaattattcaatctctcttatt 3293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 6020 - 6214
Alignment:
Q  46 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 145  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  6020 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 6119  T
Q  146 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| ||||||||||||||   |||| | ||||||||||| ||||    
T  6120 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattccatcacaattattcaatctctcttatt 6214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 8460164 - 8460330
Alignment:
Q  48 tggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccatac 147  Q
    ||||||||||||||||| || |||||| |  || || ||| | ||||||| ||||||  ||| || ||||||||||||||| |||||||||||||||| |    
T  8460164 tggagtaataggctatctggcgaagttccggtggacctctttgatttgaaacaattggaaatgattaacttgggagaaaatcaattttctggaaccattc 8460263  T
Q  148 caatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattcc 214  Q
    |||| |  |||||||   | ||||||||||||||||||||||| |||||||||||||| | ||||||    
T  8460264 caatgaacatgtcacggtatttagaagtggtcatattgagagccaaccaatttgaaggcaatattcc 8460330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 13666297 - 13666139
Alignment:
Q  82 acttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcat 181  Q
    |||||||||| ||||| || |||  || ||||||||| |||||||||||||||  |||||||||| ||||| |||| |||| ||||||  ||||||||||    
T  13666297 acttctctaacttgaaacagttgcaaaccatgaacttaggagaaaatgaatttaatggaaccataacaatcttgatttcaccaaactttcaagtggtcat 13666198  T
Q  182 attgagagctaaccaatttgaagggactattccgcaacaactgttcaatctctcctatt 240  Q
    ||||||||  ||  |||||||||| | |||||| | |||||| || |||||||| ||||    
T  13666197 attgagagaaaataaatttgaaggcagtattcccccacaactatttaatctctcttatt 13666139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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