View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0456_low_3 (Length: 439)
Name: NF0456_low_3
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0456_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 99 - 429
Target Start/End: Original strand, 33388162 - 33388503
Alignment:
| Q |
99 |
gaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaatt |
198 |
Q |
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| T |
33388162 |
gaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaatt |
33388261 |
T |
|
| Q |
199 |
gcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttct |
287 |
Q |
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| T |
33388262 |
gcacctaagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttct |
33388361 |
T |
|
| Q |
288 |
tcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctata |
387 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33388362 |
tcaatgtaagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctata |
33388461 |
T |
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| Q |
388 |
gcatttccccggttgagttcttccggcacgacctgatctctg |
429 |
Q |
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| T |
33388462 |
gcatttccccggttgagttcttccggcacgacctgatctctg |
33388503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 99 - 417
Target Start/End: Original strand, 38779203 - 38779532
Alignment:
| Q |
99 |
gaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaatt |
198 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |
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| T |
38779203 |
gaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatctcaccaagctttgttaagttaccttcatcatccagt |
38779302 |
T |
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| Q |
199 |
gcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttct |
287 |
Q |
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||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38779303 |
gcacccaagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttct |
38779402 |
T |
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| Q |
288 |
tcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctata |
387 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||| | |
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| T |
38779403 |
tcaatgtaagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaa |
38779502 |
T |
|
| Q |
388 |
gcatttccccggttgagttcttccggcacg |
417 |
Q |
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| T |
38779503 |
gcatttccccggctgagttcttccagcacg |
38779532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 99 - 429
Target Start/End: Complemental strand, 20816942 - 20816601
Alignment:
| Q |
99 |
gaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaatt |
198 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |
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| T |
20816942 |
gaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactcataatcttacccaactttgttaagttaccttcatcatccatt |
20816843 |
T |
|
| Q |
199 |
gcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttct |
287 |
Q |
| |
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||||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
20816842 |
gcacccaagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttct |
20816743 |
T |
|
| Q |
288 |
tcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctata |
387 |
Q |
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|||| |||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| | |
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| T |
20816742 |
tcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaa |
20816643 |
T |
|
| Q |
388 |
gcatttccccggttgagttcttccggcacgacctgatctctg |
429 |
Q |
| |
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||||||||| ||||| |||||||| ||||| || |||||||| |
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| T |
20816642 |
gcatttccctggttgtgttcttccagcacgcccagatctctg |
20816601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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