View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0456_low_7 (Length: 412)
Name: NF0456_low_7
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0456_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 34834766 - 34835086
Alignment:
| Q |
1 |
aaaaatacgtctatgatcacagaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactactattcctnnnnnnnnnntaatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34834766 |
aaaaatacgtctatgatcacagaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactactattcctaaaaaaaaaaaaatcaa |
34834865 |
T |
|
| Q |
101 |
agaattaataatttctcaatttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctcttttatcacgtcgaa |
200 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34834866 |
agaattaataatttttcagtttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctcttttgtcacgtcgaa |
34834965 |
T |
|
| Q |
201 |
ttctcata-ttttttgttaaggaaatggacttcgtattttttatttgagtaaatgaacttcttacatttatgattcnnnnnnnaagctaagtgtattaac |
299 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34834966 |
ttctcatatttttttgttaaggaaatggacttcgtattttttatttgagtaaatgaacttcttacatttatgatt-tttttttaagctaagtgtattaac |
34835064 |
T |
|
| Q |
300 |
atgtaccgaaatatttgatgat |
321 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
34835065 |
atgtaccgaaatgtttgatgat |
34835086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 28963454 - 28963778
Alignment:
| Q |
1 |
aaaaatacgtctatgatcacagaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactacta---ttcctnnnnnnnnnntaa- |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
28963454 |
aaaaatacgtctatgatcacagaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactactactattcctaaaaaaaaataaaa |
28963553 |
T |
|
| Q |
97 |
-tcaaagaattaataatttctcaatttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctcttttatcacg |
195 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28963554 |
atcaaagaattaataatttctcagtttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctcttttgtcacg |
28963653 |
T |
|
| Q |
196 |
tcgaattctcatattttttgttaaggaaatggacttcgtattttttatttgagtaaatgaacttcttacatttatgattcnnnnnnnaagctaagtgtat |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28963654 |
tcgaattctcatattttttgttaaggaaatggacgtcgtattttttatttgagtaaatgaacttcttacatttatgatt-tttttttaagctaagtgtat |
28963752 |
T |
|
| Q |
296 |
taacatgtaccgaaatatttgatgat |
321 |
Q |
| |
|
|||||||||||||||| ||||||||| |
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|
| T |
28963753 |
taacatgtaccgaaatgtttgatgat |
28963778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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