View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0456_low_8 (Length: 407)
Name: NF0456_low_8
Description: NF0456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0456_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 35 - 407
Target Start/End: Original strand, 6485626 - 6485998
Alignment:
| Q |
35 |
gaacctgtgctgtcaattgctaaagcagttactgcacattcttgttttaaaagttgtttaaccattacatgttttgttgctttaccacgtggttctcttc |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485626 |
gaacctgtgctgtcaattgctaaagcagttactgcacattcttgttttaaaagttgtttaaccattacatgttttgttgctttaccacgtggttctcttc |
6485725 |
T |
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| Q |
135 |
gccacactttaactgttccgtctgctgaaccagagaaaacaattccgtcgtttccacaaacgacggcgttaactgcatcctcatgggaagtagtggattc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6485726 |
gccacactttaactgttccgtctgctgaaccagagaaaacaattccgtcgtttccacaaacgacggcgttaactgcatcctcatgggaagtaatggattc |
6485825 |
T |
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| Q |
235 |
caagcactttgaatcggcgattctccaaactttgacggttctgtcccatgaagcagagtagaggtaggttttgtctggagaaaggcttaggcatgcaact |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
6485826 |
caagcactttgaatcggcgattctccaaactttgacggttctgtcccatgaagcagagtagaggtaggttttgtctggagaaagacttaggcatgaaact |
6485925 |
T |
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| Q |
335 |
gcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaatcgagc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6485926 |
gcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaattgagc |
6485998 |
T |
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