View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457-Insertion-1 (Length: 547)
Name: NF0457-Insertion-1
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457-Insertion-1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Original strand, 26392835 - 26393371
Alignment:
| Q |
11 |
ctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactttgctcttatgatc |
110 |
Q |
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| T |
26392835 |
ctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgtattttcccgtctactttgctcttatgatc |
26392934 |
T |
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| Q |
111 |
ccaatcaacaagttcttgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatattttcttggtagcaattactaata |
210 |
Q |
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| T |
26392935 |
ccaatcaacaagttcctgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatattttcttggtagcaattactaata |
26393034 |
T |
|
| Q |
211 |
tcggttgttgtcattaccattaccacgccttctataaacactttctctccgaagaatacattgggttggacccagttattatccctcatcattagtgcta |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26393035 |
tcggttgttgtcatcaccattaccacgccttctataaacactttctctccgaagaatacattgggttggacccagttattacccctcatcattagtgcta |
26393134 |
T |
|
| Q |
311 |
taaaaactttatcttcaaaccaccccctacacaaacgcgcacgcgcatgcaagtgagtacacacagtgcatgtatactttatattatttgtaaaaccaaa |
410 |
Q |
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| T |
26393135 |
taaaaactttatcttcaaaccaccccctacacacacacgcacgtgcgtgcaagtgagtacacacagtgcatgtatactttatattatttgtaaaatcaaa |
26393234 |
T |
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| Q |
411 |
catattaatacgactatataatatataatatgctgacttagatgtcaaaaaacttaaatcttcactaactttgtgtgacatggactttttaggtaagcca |
510 |
Q |
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| T |
26393235 |
catattaatacgactatataatataaaatatgctgacctagatgtcaaaaaacttaaatcttcactaactttgtgtgacatggactttttaggtaagcca |
26393334 |
T |
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| Q |
511 |
ggagtcaggacagtcaacaagagaaaacaacgacatc |
547 |
Q |
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| T |
26393335 |
ggagtcaggactgtcaacaagagaaaacaacgacatc |
26393371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 26264440 - 26264248
Alignment:
| Q |
12 |
tttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactttgctcttatgatcc |
111 |
Q |
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| T |
26264440 |
tttcatttcttgcagtatctttgcagcaccgagaagcatcgcaacatgggcatcgtgtgcacaagcatgcattttcccatctactttgctcttatgatcc |
26264341 |
T |
|
| Q |
112 |
caatcaacaagttcttgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatattttcttggtagcaattac |
205 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||| |||||||| ||||||||| || ||| ||||| |||||||| ||||||||| |
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| T |
26264340 |
caatcaacaagttcctgtgggcaggaagtatagaccagattaaggatttgacgggaacaaacttactgtcctata-tttcttggaagcaattac |
26264248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 201 - 350
Target Start/End: Original strand, 26391821 - 26391970
Alignment:
| Q |
201 |
attactaatatcggttgttgtcattaccattaccacgccttctataaacactttctctccgaagaatacattgggttggacccagttattatccctcatc |
300 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26391821 |
attactaatatcagtcgttgtcattaccattactacgccttctataaacactttctatccgaagaatacactgggttggacccagttattatccctcatc |
26391920 |
T |
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| Q |
301 |
attagtgctataaaaactttatcttcaaaccaccccctacacaaacgcgc |
350 |
Q |
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|||||| || ||||| |||| |||| ||||||||| |||||||||||||| |
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| T |
26391921 |
attagttctgtaaaatctttctcttgaaaccaccctctacacaaacgcgc |
26391970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 31838674 - 31838782
Alignment:
| Q |
11 |
ctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactttgctcttatgatc |
110 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |
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| T |
31838674 |
ctttcatttcttgcagtatctttgcagcaccaagaagcatcgccacatgtgcatcgtgcgcacaagcatgcatttttccgtctactttgcttttatgatc |
31838773 |
T |
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| Q |
111 |
ccaatcaac |
119 |
Q |
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||||||||| |
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| T |
31838774 |
ccaatcaac |
31838782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 47691926 - 47691816
Alignment:
| Q |
204 |
actaatatcggttgttgtcattaccattaccacgccttctataaacactttctctccgaagaatacattgggttggacccagttattatccctcatcatt |
303 |
Q |
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|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
47691926 |
actaatatcggtcgttgtcattaccattaccaccccttctataaacactttctctccgaagaatacattgggttggacccagttgttatctctcatcatt |
47691827 |
T |
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| Q |
304 |
agtgctataaa |
314 |
Q |
| |
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||| ||||||| |
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| T |
47691826 |
agttctataaa |
47691816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 35333071 - 35333127
Alignment:
| Q |
370 |
cacacagtgcatgtatactttatattatttgtaaaaccaaacatattaatacgacta |
426 |
Q |
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|||||| | ||| ||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
35333071 |
cacacactacatatatactttatattatttgtaaaatcaaacttattaatacaacta |
35333127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 19973155 - 19973202
Alignment:
| Q |
285 |
gttattatccctcatcattagtgctataaaaactttatcttcaaacca |
332 |
Q |
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| T |
19973155 |
gttattatccctcatcattagttctataaacactttctcttccaacca |
19973202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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