View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457-Insertion-3 (Length: 352)
Name: NF0457-Insertion-3
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 145 - 352
Target Start/End: Original strand, 38127410 - 38127617
Alignment:
| Q |
145 |
catctgttttgtctacatgatagaacatgcatttgggttttcatcactgaacatgttgacataagggtcttcatattttgtcatggttccagtggttgga |
244 |
Q |
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| T |
38127410 |
catctgttttgtctacatgatagaacatgcatttgggttttcatcactgaacatgttgacataagggtcttcatattttgtcatggttccagtggttgga |
38127509 |
T |
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| Q |
245 |
gcattctccactctcctcacataaccaggaggagccttcttgtcataagaagaaacagcatatggttgagccaccaagttgtatggcacataaggccaaa |
344 |
Q |
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| T |
38127510 |
gcattctccactctcctcacataaccaggaggagccttcttgtcataagaagaaacagcatatggttgagccaccaagttgtatggcacataaggccaaa |
38127609 |
T |
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| Q |
345 |
tttcagcc |
352 |
Q |
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|||||||| |
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| T |
38127610 |
tttcagcc |
38127617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 38127273 - 38127314
Alignment:
| Q |
8 |
ttttcatgttaagaaaagtccataatgtaggataacgagctt |
49 |
Q |
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| T |
38127273 |
ttttcatgttaagaaaagtccataatgtaggataacgagctt |
38127314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 40576992 - 40577029
Alignment:
| Q |
158 |
tacatgatagaacatgcatttgggttttcatcactgaa |
195 |
Q |
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| T |
40576992 |
tacatgatagaacaagcatttggattttcatcactgaa |
40577029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 39763085 - 39763176
Alignment:
| Q |
251 |
tccactctcctcacataaccaggaggagccttcttgtcataagaagaaacagcatatggttgagccaccaagttgtatggcacataaggcca |
342 |
Q |
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| T |
39763085 |
tccaatctccttacatatccaggaggagccttcttgtcataagaaggagcagcgtatggatgaaccaccatgttgtatggcacataaggcca |
39763176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 33236027 - 33235987
Alignment:
| Q |
158 |
tacatgatagaacatgcatttgggttttcatcactgaacat |
198 |
Q |
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| T |
33236027 |
tacataatagaacaagcatttggattttcatcactgaacat |
33235987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 10653036 - 10652992
Alignment:
| Q |
158 |
tacatgatagaacatgcatttgggttttcatcactgaacatgttg |
202 |
Q |
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| T |
10653036 |
tacatgatggaacatgcattagggttttcatcactaaacatgttg |
10652992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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