View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0457-Insertion-4 (Length: 258)

Name: NF0457-Insertion-4
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0457-Insertion-4
NF0457-Insertion-4
[»] chr2 (7 HSPs)
chr2 (7-238)||(28158526-28158757)
chr2 (7-238)||(28169097-28169326)
chr2 (45-238)||(28177224-28177416)
chr2 (45-116)||(28174189-28174260)
chr2 (45-116)||(28161250-28161321)
chr2 (116-169)||(28182843-28182896)
chr2 (194-238)||(28183157-28183201)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 28158526 - 28158757
Alignment:
Q  7 aaaagcttaatggttcaatttggatattggttatattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28158526 aaaagcttaatggttcaatttggatattggttatattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg 28158625  T
Q  107 gtgtatccttgatgtggcctcaattgcaaacgtagagacatcgaaaaccatgatgtcgtagctttaacatggtgacatactttgtttactctaacagaaa 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  28158626 gtgtatccttgatgtggcctcaattgcaaacgcagagacatcgaaaaccatgatgtcgtagctttaacacgatcacatactttgttcactctaacagaaa 28158725  T
Q  207 agtgatgtcatgcatgcaagcgttgtcatctg 238  Q
    |||||||||||||||||||| |||||| ||||    
T  28158726 agtgatgtcatgcatgcaagagttgtcgtctg 28158757  T

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Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 28169097 - 28169326
Alignment:
Q  7 aaaagcttaatggttcaatttggatattggttatattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg 106  Q
    |||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28169097 aaaagcttaatggttcaattgggatattggttatattatatg--cacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg 28169194  T
Q  107 gtgtatccttgatgtggcctcaattgcaaacgtagagacatcgaaaaccatgatgtcgtagctttaacatggtgacatactttgtttactctaacagaaa 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  28169195 gtgtatccttgatgtggcctcaattgcaaacgcagagacatcgaaaaccatgatgtcgtagctttaacacgatcacatactttgttcactctaacagaaa 28169294  T
Q  207 agtgatgtcatgcatgcaagcgttgtcatctg 238  Q
    |||||||||||||||||||| |||||| ||||    
T  28169295 agtgatgtcatgcatgcaagagttgtcgtctg 28169326  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 238
Target Start/End: Original strand, 28177224 - 28177416
Alignment:
Q  45 tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatccttgatgtggcctcaattgcaaacgtagaga 144  Q
    ||||| ||||||||||||||||| ||  | |||| ||||||||||| ||||||||||||||| ||||||        |||||||||| |||||| |||||    
T  28177224 tatatgcacattaatttcaagctaattcggtacaacagaagcatataaaatttcaagattggctgtatc--------ggcctcaattacaaacgcagaga 28177315  T
Q  145 catcgaaaaccatgatgtcgtagctttaacatggtgac-------atactttgtttactctaacagaaaagtgatgtcatgcatgcaagcgttgtcatct 237  Q
    |||| |||| |||||||||||| ||||||||  || ||       |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  28177316 catcaaaaaacatgatgtcgtaactttaacactgtcaccggtcgcatactttgttcactctaacataaaagtgatgtcaggcatgcaagcgttgtcatct 28177415  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 28174189 - 28174260
Alignment:
Q  45 tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatcctt 116  Q
    ||||| |||||||| ||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  28174189 tatatgcacattaacttcaaactgatggggtacatcagacgcatatgaattttcaagattgggtgtatcctt 28174260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 28161250 - 28161321
Alignment:
Q  45 tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatcctt 116  Q
    ||||| ||||||||||||||||| ||  | |||||||||||||||  ||||||||||||||| |||||||||    
T  28161250 tatatgcacattaatttcaagctaattcggtacatcagaagcatagaaaatttcaagattggctgtatcctt 28161321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 28182843 - 28182896
Alignment:
Q  116 tgatgtggcctcaattgcaaacgtagagacatcgaaaaccatgatgtcgtagct 169  Q
    |||||||||||||||||||   | ||||||||| |||||||||||||| |||||    
T  28182843 tgatgtggcctcaattgcagttggagagacatcaaaaaccatgatgtcatagct 28182896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 28183157 - 28183201
Alignment:
Q  194 actctaacagaaaagtgatgtcatgcatgcaagcgttgtcatctg 238  Q
    ||||||||| ||||| |||||||| |||| |||||||||||||||    
T  28183157 actctaacaaaaaagggatgtcatacatggaagcgttgtcatctg 28183201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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