View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457-Insertion-7 (Length: 113)
Name: NF0457-Insertion-7
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 9072568 - 9072466
Alignment:
| Q |
11 |
ctagagagagaaaattagaatcggcttgttgaaaagggagaggaagctaaattataacattaaaacttaaattctcccatcagagtataaataatcacgc |
110 |
Q |
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| T |
9072568 |
ctagagagagaaaattagggtcggtttgctggaaagggagaggaagctgaattataacattaaaacttaaattctcccattagagtataaataatcacgc |
9072469 |
T |
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| Q |
111 |
aca |
113 |
Q |
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||| |
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| T |
9072468 |
aca |
9072466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 23085370 - 23085325
Alignment:
| Q |
7 |
aaacctagagagagaaaattagaatcggcttgttgaaaagggagag |
52 |
Q |
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| T |
23085370 |
aaacctagagagagaaaattagggtcggcttgttggagagggagag |
23085325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 42311128 - 42311084
Alignment:
| Q |
7 |
aaacctagagagagaaaattagaatcggcttgttgaaaagggaga |
51 |
Q |
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| T |
42311128 |
aaacctagagagagaaaattagggtcggcttgttggagagggaga |
42311084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 6972670 - 6972621
Alignment:
| Q |
7 |
aaacctagagagagaaaattagaatcggcttgttgaaaagggagaggaag |
56 |
Q |
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| T |
6972670 |
aaacctagagagagaaaattagggccggcttgttggagagggagaggaag |
6972621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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