View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0457_high_1 (Length: 687)
Name: NF0457_high_1
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 29 - 602
Target Start/End: Complemental strand, 37915175 - 37914602
Alignment:
| Q |
29 |
aatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagagg |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915175 |
aatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagagg |
37915076 |
T |
|
| Q |
129 |
aacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttg |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915075 |
aacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttg |
37914976 |
T |
|
| Q |
229 |
aagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37914975 |
aagtctgctgaggattcagctatggtgaaggagatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggt |
37914876 |
T |
|
| Q |
329 |
tggaggtgaagggaaagaagtgttgaagggttaatgaaagtgtgtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtg |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914875 |
tggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtg |
37914776 |
T |
|
| Q |
429 |
gtagaagaagatgcgtttaannnnnnntttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggt |
528 |
Q |
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| T |
37914775 |
gtagaagaagatgcgtttaagggggggtttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggt |
37914676 |
T |
|
| Q |
529 |
ggtgaaatttgagtctgctctatcaccttcataattactgtttcgttatgatagaatttgatctcgtgatgatg |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914675 |
ggtgaaatttgagtctgctctatcaccttcataattactgtttcgttatgatagaatttgatctcgtgatgatg |
37914602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 147 - 595
Target Start/End: Complemental strand, 37906894 - 37906446
Alignment:
| Q |
147 |
ttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattca |
246 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37906894 |
ttgttcggtacgaggtggaggtaaatttggaacgagatggtgccagttttgagcatcttgtgaatcagatacgaggatgttgaagtctgctgaggattca |
37906795 |
T |
|
| Q |
247 |
gctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaaga |
346 |
Q |
| |
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|||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906794 |
gctacagtgaaggaaatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaaga |
37906695 |
T |
|
| Q |
347 |
agtgttgaagggttaatgaaagtgtgtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgttt |
446 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37906694 |
agtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacgttt |
37906595 |
T |
|
| Q |
447 |
aannnnnnntttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgc |
546 |
Q |
| |
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|| || ||||||||||| |||||||| ||||| |||||||||| | | |||||||||||||||||| |||||||||||| || ||| | || |
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| T |
37906594 |
aacagtgggttgacagtaaaaccatgaaatgtcgaagaaggtgagagggagtgttgttggtgatggaagtgaatttggtggtggtgcaacttggctatgt |
37906495 |
T |
|
| Q |
547 |
tctatcaccttcataattactgtttcgttatgatagaatttgatctcgt |
595 |
Q |
| |
|
||||| |||||||| || ||||| | ||| |||| ||||||| |||||| |
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| T |
37906494 |
tctattaccttcatcataactgtgttgttgtgattgaatttggtctcgt |
37906446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 147 - 445
Target Start/End: Original strand, 37961174 - 37961472
Alignment:
| Q |
147 |
ttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattca |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
37961174 |
ttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattca |
37961273 |
T |
|
| Q |
247 |
gctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaaga |
346 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||| || || |||| |
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| T |
37961274 |
gctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttttgggaatttggagggacgatgaggttagaggaaaaagggaaga |
37961373 |
T |
|
| Q |
347 |
agtgttgaagggttaatgaaagtgtgtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtt |
445 |
Q |
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||||| | ||||||| ||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||| |
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| T |
37961374 |
agtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgtt |
37961472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 37961526 - 37961584
Alignment:
| Q |
502 |
gttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcat |
560 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| || |||| | || |||||||||||||| |
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|
| T |
37961526 |
gttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
37961584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 34 - 448
Target Start/End: Complemental strand, 3783279 - 3782862
Alignment:
| Q |
34 |
tgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagaggaacaa |
133 |
Q |
| |
|
|||||||||||||| || | ||| ||| ||||||| ||| || |||| ||| |||||||||||||||||||||| |||||||||||| ||||| || | |
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|
| T |
3783279 |
tgaagtgattttccatcacctgcaatgtggttaaacgtgaggcagatagcgaatccagagttaggtagaatggtgacttgaatggccattagagggacga |
3783180 |
T |
|
| Q |
134 |
tacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaa---tcagatatgaggatgttgaa |
230 |
Q |
| |
|
| ||| |||| ||||||||| |||| | ||| || || |||| || ||||||| |||||| | ||||||||||| || || || |||| |||||| |
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|
| T |
3783179 |
cgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaaaaaagggtgcaaatttttaacatcttgtgaagaatctgaaataaggaggttgaa |
3783080 |
T |
|
| Q |
231 |
gtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggttg |
330 |
Q |
| |
|
|| |||| |||||||||| ||||||||||||| ||||||| || ||||| ||||| ||||| ||| || | ||||| || ||| || || || ||| |
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|
| T |
3783079 |
gtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagggggaacattttcggaatgtgaaggaattataagattg |
3782980 |
T |
|
| Q |
331 |
gaggtgaagggaaagaagtgttgaagggttaatgaaagtgtgtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggt |
430 |
Q |
| |
|
|| | | | ||||||||||||| ||||| | ||||| | |||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
3782979 |
gaagagtatggaaagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggt |
3782880 |
T |
|
| Q |
431 |
agaagaagatgcgtttaa |
448 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3782879 |
agaagaagatgcgtttaa |
3782862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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