View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_high_2 (Length: 583)
Name: NF0457_high_2
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 37 - 573
Target Start/End: Complemental strand, 35350959 - 35350424
Alignment:
| Q |
37 |
gttgatcgcctccaaatttgtggttaataaaaggattaactatgattttagtccctccaattatagagnnnnnnnnnnnnnnnnnnnagtccctataact |
136 |
Q |
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| T |
35350959 |
gttgatcgcctccaaatttgtggttaataaaaggattaactatgattttagtccctccaattatagagttttttggttttactttttagtccatataact |
35350860 |
T |
|
| Q |
137 |
ttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgatggcatgcatagctcaataaaatcatgccacattgcccaatatgt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35350859 |
ttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgacagcatacatagctcaataaaatcatgccacattgcccaatatgt |
35350760 |
T |
|
| Q |
237 |
tgatgtcagggaagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaaccnnnnnnntgttataattacaagaact |
336 |
Q |
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| T |
35350759 |
tgatgtcagggaagcaacaatctctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaaccaaaaaaatgttataattacaagaact |
35350660 |
T |
|
| Q |
337 |
aaattcatatttaagccttaacaaaattacattgatgaagttctgtaatacaactcagttggtagctgcaagtatgttgatacgcaggggcaagggtttg |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35350659 |
aaattcatatttaagccttaacaaaattacattgatgatgttctgtaatacaactcagttggtagctgcaagtacgttgatacgcaggggcaagggtttg |
35350560 |
T |
|
| Q |
437 |
aaa-ccagattatccatttttccacacttaaatgtgtgagtctcatcaccaggctaatttgtctgtgtgtgnnnnnnnncgtgattgtgttaatcactta |
535 |
Q |
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| T |
35350559 |
aaacccagattatccatttttgcacacttaaa--tgtgagtctcatcaccaggctaatttgtctatgtgtattttttttcatgattgtgttaatcactta |
35350462 |
T |
|
| Q |
536 |
aataacacaacttaatccaattagtcttgtaatctctg |
573 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
35350461 |
aataacacaacttaatccaagtagtcttgtaatctctg |
35350424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 28855320 - 28855364
Alignment:
| Q |
248 |
aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaa |
292 |
Q |
| |
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|||||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
28855320 |
aagcaacaatttttgaatttgcaacgaccgaacccaaacaaaaaa |
28855364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 22159516 - 22159578
Alignment:
| Q |
248 |
aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaacc |
310 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||| |||||| | |||||||||| |
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|
| T |
22159516 |
aagcaacaatttttgaatttgcagggactgaaaccaaacaaataacttagagggactaaaacc |
22159578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 22218224 - 22218286
Alignment:
| Q |
248 |
aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaacc |
310 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||| |||||| | |||||||||| |
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|
| T |
22218224 |
aagcaacaatttttgaatttgcagggactgaaaccaaacaaataacttagagggactaaaacc |
22218286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 39022842 - 39022901
Alignment:
| Q |
248 |
aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaa |
307 |
Q |
| |
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||||||||||||| |||||||||| ||||||| | || |||||||||||| | ||||||| |
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| T |
39022842 |
aagcaacaatttccgaatttgcagggactgaatctaagcaaaaaacttatagggactaaa |
39022901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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