View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0457_low_10 (Length: 319)
Name: NF0457_low_10
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_10 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 98 - 319
Target Start/End: Complemental strand, 36738096 - 36737878
Alignment:
| Q |
98 |
agtactgctgaagcatctagggttgttgttggttcttcttcagccattgtttctagggttcttgctgctactcctagacctcttgttgctgctgaaggtt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36738096 |
agtactgctgaagcatctagggttgttgttggttcttcaaca---attgtttctagggttcttgctgctactcctagacctcttgttgctgctgaaggtt |
36738000 |
T |
|
| Q |
198 |
gtcacagtaaatgtgattcttcttctgttgctgatgatgaagatgaagattgtgttatcatttcttcttcagctcggaaacctttaaacattgatctcaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36737999 |
gtcacagtaaatgtgattcttcttctgttgcggatgatgaagatgaagattgtgttatcatttcttcttcagctcggaaacctttaaacattgatctcaa |
36737900 |
T |
|
| Q |
298 |
tttcccccctccaccaaatttt |
319 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36737899 |
tttcccccctccaccaaatttt |
36737878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 318
Target Start/End: Complemental strand, 36735176 - 36734964
Alignment:
| Q |
106 |
tgaagcatctagggttgttgttggttcttcttcagccattgtttctagggttcttgctgctactcctagacctcttgttgctgctgaaggttgtcacagt |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || ||||||||||||||| || ||||||| ||| |||| | ||| | ||||| | |||||| | |
|
|
| T |
36735176 |
tgaagcatctagggttgctgttggttcttcttcaaccgttgtttctagggttcctgttgctacttctatacctgctattgtaggtgaagatcgtcacaat |
36735077 |
T |
|
| Q |
206 |
aaatgtgattcttcttctgttgct---gatgatgaagatgaagattgtgttatcatttcttcttcagctcggaaacctttaaacattgatctcaatttcc |
302 |
Q |
| |
|
| | |||| |||||||||||| | |||||||| || |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
36735076 |
gattttgatgcttcttctgttgatgtggatgatgatgaagaagattgtgttatca---cttcttcatttcggaagcctttaaacattgatctcaatttcc |
36734980 |
T |
|
| Q |
303 |
cccctccaccaaattt |
318 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
36734979 |
ctcctccaccaaattt |
36734964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 111 times since January 2019
Visitors: 3464