View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_12 (Length: 314)
Name: NF0457_low_12
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 37 - 292
Target Start/End: Original strand, 20269750 - 20270005
Alignment:
| Q |
37 |
cttcaaggatggttgaaaatggtgtcaaggaaggacagagtagggaaattttcacaaggtaaaactgtctatagcataatgtttaaattcataagcatta |
136 |
Q |
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| T |
20269750 |
cttcaaggatggttgaaaatgctgtcaaggaaggacagagtagggaaattttcacaaggtaaaactgtctatagcataatgtttaaattcataagcatta |
20269849 |
T |
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| Q |
137 |
tttcgtcattttactcttttacaggagtgtatctgtttccatgagataatgtactgaagagacggttgattctaacatggagaatttttacacgtaaaga |
236 |
Q |
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| T |
20269850 |
tttcgtcattttaattttttacaggagagtatctgtttccatgagataatgtactgaagagacggttgattctaacatggagaaattttacacgtaacga |
20269949 |
T |
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| Q |
237 |
ttatccccaaattttcggctcaaggtatgttgcagtaacaatttttgtggtctgtg |
292 |
Q |
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| T |
20269950 |
ttatccccaaactttcggcttaaggtatgttgcagtaacaatttttgtggtttgtg |
20270005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 73 - 292
Target Start/End: Original strand, 20234723 - 20234942
Alignment:
| Q |
73 |
agagtagggaaattttcacaaggtaaaactgtctatagcataatgtttaaattcataagcattatttcgtcattttactcttttacaggagtgtatctgt |
172 |
Q |
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| T |
20234723 |
agagtagggaaattttcacaaggtaaaactgtctatagcataatgtttaaattcataagcattatttcgtcattttaattttttacaggagagtatctgt |
20234822 |
T |
|
| Q |
173 |
ttccatgagataatgtactgaagagacggttgattctaacatggagaatttttacacgtaaagattatccccaaattttcggctcaaggtatgttgcagt |
272 |
Q |
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| T |
20234823 |
ttccatgagataatgtactgaagagacggttgattctaacatggagaaattttacacgtaacgattatccccaaactttcggcttaaggtatgttgcagt |
20234922 |
T |
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| Q |
273 |
aacaatttttgtggtctgtg |
292 |
Q |
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| T |
20234923 |
aacaatttttgtggtttgtg |
20234942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 20234650 - 20234696
Alignment:
| Q |
30 |
aaagatgcttcaaggatggttgaaaatggtgtcaaggaaggacagag |
76 |
Q |
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| T |
20234650 |
aaagatgcttcaaggatggttgaaaatgctgtcaaggaaggacagag |
20234696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 20258752 - 20258788
Alignment:
| Q |
73 |
agagtagggaaattttcacaaggtaaaactgtctata |
109 |
Q |
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| T |
20258752 |
agagtagggaaattttcacaaggtaaaactgtctata |
20258788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 20258683 - 20258720
Alignment:
| Q |
34 |
atgcttcaaggatggttgaaaatggtgtcaaggaagga |
71 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
20258683 |
atgcttcaaggatggttgaaaatgttgtcaaggaagga |
20258720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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