View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0457_low_15 (Length: 306)

Name: NF0457_low_15
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0457_low_15
NF0457_low_15
[»] chr3 (2 HSPs)
chr3 (38-240)||(15214311-15214513)
chr3 (38-240)||(15253530-15253732)
[»] chr8 (1 HSPs)
chr8 (38-240)||(22603385-22603587)
[»] chr7 (1 HSPs)
chr7 (38-240)||(45621864-45622066)
[»] chr1 (2 HSPs)
chr1 (38-240)||(20188192-20188394)
chr1 (147-236)||(51091612-51091705)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 15214513 - 15214311
Alignment:
Q  38 atggacatttcttatattgctaattacagtaatttataagcacatacttaatattgctctcctgttatgaagaaacaacccaccaatagcgatttcctga 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  15214513 atggacatctcttatattgctaattacagtaatttataagcacatatttaatattgttctcctgtcatgaagaaataacccaccaatagcgatttcctga 15214414  T
Q  138 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtcctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  15214413 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgtttctattatatcctt 15214314  T
Q  238 cat 240  Q
    |||    
T  15214313 cat 15214311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 15253732 - 15253530
Alignment:
Q  38 atggacatttcttatattgctaattacagtaatttataagcacatacttaatattgctctcctgttatgaagaaacaacccaccaatagcgatttcctga 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  15253732 atggacatctcttatattgctaattacagtaatttataagcacatatttaatattgttctcctgtcatgaagaaataacccaccaatagcgatttcctga 15253633  T
Q  138 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtcctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  15253632 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgtttctattatatcctt 15253533  T
Q  238 cat 240  Q
    |||    
T  15253532 cat 15253530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 22603385 - 22603587
Alignment:
Q  38 atggacatttcttatattgctaattacagtaatttataagcacatacttaatattgctctcctgttatgaagaaacaacccaccaatagcgatttcctga 137  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  22603385 atggacatctcttatattgctaattacagaaatttataagcacatacttaatattgctctcctgtcatgaagaaacaacccaccaatagcggtttcctga 22603484  T
Q  138 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtcctt 237  Q
     |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  22603485 gtgttccatggtgcatgcatttttcttttgatttttgtttcagtgcaataaacaattctttagtgattttatatttatccattgtttctattatatcctt 22603584  T
Q  238 cat 240  Q
    |||    
T  22603585 cat 22603587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 45621864 - 45622066
Alignment:
Q  38 atggacatttcttatattgctaattacagtaatttataagcacatacttaatattgctctcctgttatgaagaaacaacccaccaatagcgatttcctga 137  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  45621864 atggacatctcttatattgctaattacagtaatttataagcacatacttaatattgctctcatgtcatgaagaaacaacccaccaatagcggtttcctga 45621963  T
Q  138 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtcctt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  45621964 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaactctttagcgaatttatatttatccattgtttctattatatcctt 45622063  T
Q  238 cat 240  Q
    |||    
T  45622064 cat 45622066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 20188192 - 20188394
Alignment:
Q  38 atggacatttcttatattgctaattacagtaatttataagcacatacttaatattgctctcctgttatgaagaaacaacccaccaatagcgatttcctga 137  Q
    |||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||| ||||||||||||| ||||||||    
T  20188192 atggacatctcttatattgctaattacagtaatttataagcacgtatttaatattgctctcctatcatgaagaaacaccccaccaatagcggtttcctga 20188291  T
Q  138 atgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtcctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  20188292 atgttccatggtgcatgcatttttcttttgatttcagtttcactgcaataaacaattctttagtgattttatatttatgcattgtttctattatatcctt 20188391  T
Q  238 cat 240  Q
    |||    
T  20188392 cat 20188394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 51091612 - 51091705
Alignment:
Q  147 ggtgcatgcatttttcttttgatt----tcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtcct 236  Q
    |||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||    
T  51091612 ggtgcatgcatttttcttttaattaatttcagtttcagtgcaataaacaattctttagtgattttatattcatcaattgtttctattatatcct 51091705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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