View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_16 (Length: 299)
Name: NF0457_low_16
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 19813355 - 19813190
Alignment:
| Q |
70 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19813355 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
19813256 |
T |
|
| Q |
170 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttcttcg |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19813255 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttattcg |
19813190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 32689645 - 32689480
Alignment:
| Q |
70 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
169 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
32689645 |
catcatcacagtcagcctctggttcacagcctccttccgtgggagttgttcaggagggatacgatggaggaccttcaaacaagtctttgttgccgagttt |
32689546 |
T |
|
| Q |
170 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttcttcg |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
32689545 |
tggccaacatattgcagcaaagatttggaatggaggtgtaagattttcttttatttattttattcg |
32689480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 1202277 - 1202112
Alignment:
| Q |
70 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
169 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1202277 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
1202178 |
T |
|
| Q |
170 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttcttcg |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1202177 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttattcg |
1202112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 25747813 - 25747982
Alignment:
| Q |
71 |
atcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacac-----gtctttgttgccga |
165 |
Q |
| |
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||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
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| T |
25747813 |
atcatcatagtcagcctctgattcacagcctccttctgtgggagttgttcaggagggttacgatggaggaccttcgaacagtacatgtctttgttcccga |
25747912 |
T |
|
| Q |
166 |
gttttggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttcttcg |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
25747913 |
gttttggccaacatattccagcaaagatttggaatggaggggtaagaatttcttttatttattttattcg |
25747982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 25205851 - 25206011
Alignment:
| Q |
70 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||| |
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| T |
25205851 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaaaagggatacgatggaggaccttcagatacgtctttgttgccaaattt |
25205950 |
T |
|
| Q |
170 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttatttt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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|
| T |
25205951 |
tggccaacatattgcagcaaagatttggaatggcggggtaaaaatttattttatttatttt |
25206011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 26941307 - 26941472
Alignment:
| Q |
70 |
catcatcacagtcagcctctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttt |
169 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
26941307 |
catcattacagtcggcctctggttcacagcctccttccgtgggatttgttcaggagggatacggtggaggaccttcggacacgtctttgttgccgagttt |
26941406 |
T |
|
| Q |
170 |
tggccaacatattgcagcaaagatttggaatggaggggtaagaatttcttttatttattttcttcg |
235 |
Q |
| |
|
|||| |||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| |||| |
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| T |
26941407 |
tggcaaacaaattgcaacaaagatttggaacggaggggtaataatttcttttgtttattttattcg |
26941472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 47853689 - 47853561
Alignment:
| Q |
93 |
tcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttttggccaacatattgcagcaaaga |
192 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||| || | |||||||||| | |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
47853689 |
tcacagcctccttccgtaggagtggttcaagagggctatggcagaggaccttctgagacgtctttgttgccgaattttggccaacatattgcagccaaga |
47853590 |
T |
|
| Q |
193 |
tttggaatggaggggtaagaatttctttt |
221 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
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|
| T |
47853589 |
tttggaatggagaggtaagaatttctttt |
47853561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 47720049 - 47720176
Alignment:
| Q |
87 |
tctggttcacaacctccttccgtgggagttgttcaggagggatacgatggaggaccttcgaacacgtctttgttgccgagttttggccaacatattgcag |
186 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||||| ||||| || | |||||||||| | |||||||||||||||| |||||||||||||||||||| |
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|
| T |
47720049 |
tctggctcacaacctccttctgtaggagtggttcaagagggctatggcagaggaccttctgagacgtctttgttgccgaattttggccaacatattgcag |
47720148 |
T |
|
| Q |
187 |
caaagatttggaatggaggggtaagaat |
214 |
Q |
| |
|
| |||||||||||||||| ||||||||| |
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|
| T |
47720149 |
ccaagatttggaatggagaggtaagaat |
47720176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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