View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0457_low_19 (Length: 279)

Name: NF0457_low_19
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0457_low_19
NF0457_low_19
[»] chr1 (13 HSPs)
chr1 (41-174)||(24227996-24228129)
chr1 (147-227)||(20908657-20908737)
chr1 (114-220)||(20110720-20110823)
chr1 (41-112)||(24236324-24236391)
chr1 (114-225)||(17017778-17017877)
chr1 (113-169)||(3170946-3171002)
chr1 (114-169)||(3181549-3181604)
chr1 (114-169)||(36099863-36099918)
chr1 (114-169)||(9750044-9750097)
chr1 (114-169)||(10256276-10256328)
chr1 (114-169)||(23160888-23160940)
chr1 (114-169)||(28379141-28379197)
chr1 (114-169)||(52351484-52351540)
[»] chr2 (7 HSPs)
chr2 (113-227)||(24838285-24838398)
chr2 (114-223)||(24843388-24843493)
chr2 (113-213)||(10899320-10899417)
chr2 (113-183)||(20567415-20567490)
chr2 (179-226)||(41122473-41122520)
chr2 (179-229)||(22271353-22271403)
chr2 (114-169)||(24415821-24415873)
[»] scaffold0622 (1 HSPs)
scaffold0622 (113-227)||(1862-1971)
[»] chr5 (4 HSPs)
chr5 (113-223)||(34637703-34637809)
chr5 (114-213)||(2157117-2157211)
chr5 (113-169)||(14446305-14446358)
chr5 (114-169)||(11208905-11208957)
[»] chr3 (19 HSPs)
chr3 (113-223)||(12396222-12396328)
chr3 (114-212)||(14078198-14078292)
chr3 (114-220)||(15960185-15960289)
chr3 (147-225)||(6252635-6252712)
chr3 (147-220)||(15961477-15961550)
chr3 (162-220)||(19198731-19198789)
chr3 (114-172)||(40799085-40799140)
chr3 (147-225)||(6174522-6174599)
chr3 (114-169)||(9381439-9381493)
chr3 (147-213)||(10849783-10849850)
chr3 (146-213)||(12901197-12901264)
chr3 (114-199)||(14006879-14006958)
chr3 (114-169)||(13076293-13076345)
chr3 (114-169)||(8784669-8784721)
chr3 (114-169)||(9535009-9535061)
chr3 (179-227)||(20724299-20724347)
chr3 (114-169)||(28325633-28325685)
chr3 (114-169)||(39371452-39371504)
chr3 (111-169)||(51989972-51990026)
[»] chr8 (10 HSPs)
chr8 (114-227)||(16376181-16376289)
chr8 (114-174)||(23772372-23772432)
chr8 (114-170)||(33561127-33561183)
chr8 (114-169)||(36077347-36077400)
chr8 (108-167)||(17442761-17442820)
chr8 (114-167)||(29378756-29378807)
chr8 (113-169)||(23470277-23470330)
chr8 (114-169)||(23290312-23290364)
chr8 (114-169)||(23363538-23363594)
chr8 (179-227)||(43644136-43644184)
[»] chr4 (11 HSPs)
chr4 (147-227)||(14357567-14357647)
chr4 (147-223)||(10249156-10249232)
chr4 (159-227)||(15560509-15560576)
chr4 (147-207)||(7136306-7136366)
chr4 (179-227)||(22089540-22089588)
chr4 (114-169)||(29042445-29042499)
chr4 (114-169)||(3189165-3189217)
chr4 (179-227)||(11900364-11900412)
chr4 (114-220)||(17057924-17058026)
chr4 (114-169)||(19143791-19143846)
chr4 (114-169)||(29030331-29030384)
[»] scaffold0004 (1 HSPs)
scaffold0004 (147-223)||(87592-87666)
[»] chr7 (13 HSPs)
chr7 (152-223)||(7488758-7488829)
chr7 (147-207)||(14304672-14304732)
chr7 (114-223)||(16409001-16409107)
chr7 (114-169)||(601987-602040)
chr7 (110-169)||(11052633-11052689)
chr7 (113-169)||(45931031-45931086)
chr7 (114-169)||(1775516-1775571)
chr7 (114-169)||(1986921-1986976)
chr7 (114-169)||(1997544-1997597)
chr7 (114-169)||(8002929-8002981)
chr7 (114-169)||(8013574-8013626)
chr7 (114-169)||(42865211-42865263)
chr7 (114-169)||(42875836-42875889)
[»] scaffold0037 (1 HSPs)
scaffold0037 (114-227)||(76448-76556)
[»] chr6 (18 HSPs)
chr6 (114-216)||(12347282-12347382)
chr6 (147-223)||(7811228-7811304)
chr6 (151-223)||(25591856-25591928)
chr6 (147-227)||(25929711-25929792)
chr6 (113-205)||(30451855-30451942)
chr6 (116-221)||(23295989-23296090)
chr6 (116-220)||(32335030-32335129)
chr6 (113-227)||(17304107-17304223)
chr6 (162-220)||(16463510-16463568)
chr6 (113-211)||(17446501-17446594)
chr6 (114-220)||(21034236-21034335)
chr6 (114-169)||(27383785-27383839)
chr6 (114-169)||(27474169-27474223)
chr6 (114-169)||(27503667-27503721)
chr6 (114-171)||(24717721-24717779)
chr6 (114-169)||(1902083-1902136)
chr6 (179-227)||(7762898-7762946)
chr6 (109-169)||(25678755-25678815)
[»] scaffold0009 (1 HSPs)
scaffold0009 (155-225)||(267952-268023)
[»] scaffold0201 (1 HSPs)
scaffold0201 (114-212)||(18400-18495)
[»] scaffold0598 (1 HSPs)
scaffold0598 (114-227)||(2587-2707)
[»] scaffold0017 (1 HSPs)
scaffold0017 (117-220)||(9921-10025)
[»] scaffold0273 (1 HSPs)
scaffold0273 (162-223)||(22260-22321)
[»] scaffold0398 (1 HSPs)
scaffold0398 (114-170)||(13307-13360)
[»] scaffold0040 (1 HSPs)
scaffold0040 (114-171)||(2930-2987)
[»] scaffold1507 (1 HSPs)
scaffold1507 (114-169)||(254-306)
[»] scaffold0171 (1 HSPs)
scaffold0171 (114-169)||(269-321)
[»] scaffold0081 (1 HSPs)
scaffold0081 (179-227)||(13254-13302)
[»] scaffold0011 (1 HSPs)
scaffold0011 (114-213)||(58775-58866)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 24228129 - 24227996
Alignment:
Q  41 tgaaccttgaagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaagctgaaggtgagaaaaacacaagagaggg 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  24228129 tgaaccttgaagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaagttgaaggtgagaaaaacacaagaggggg 24228030  T
Q  141 tgggatgttgaattgtggtttctttttcttctcc 174  Q
     ||| |||||||||||||||||||||||||||||    
T  24228029 gggggtgttgaattgtggtttctttttcttctcc 24227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 20908657 - 20908737
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  20908657 gttgaattgtggtttctttttcttctcctaaaactgaagtcactgctcagaacctgatagacttcagcttctgaagtgatg 20908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 20110823 - 20110720
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||||||||||||| |||| |||   |||||||||| ||||||||||||| |||||||||||  | |||| |||||| ||||||||||||||    
T  20110823 tgaaggtgagaaaaacacaagaaaggggggg---ttgaattgtgttttctttttcttcacctaaaactgagttcactgatcagaagctgatagagttcag 20110727  T
Q  214 cttctga 220  Q
     ||||||    
T  20110726 tttctga 20110720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 24236391 - 24236324
Alignment:
Q  41 tgaaccttgaagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaag 112  Q
    ||||||||||||||||||| |||||||||||||| |||||||||   || |||||| |||||||||||||||    
T  24236391 tgaaccttgaagcaaaaca-tcacaataacaacaaagagctaag---tgcgacctaacgagggatatcaaag 24236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 17017778 - 17017877
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||||||||||||| |||| ||    |||||||||| |||||||| |||||      |||||||| ||| ||||||| ||||||||||||||    
T  17017778 tgaaggtgagaaaaacacaaga-agggggg----ttgaattgtgatttctttt-cttct------actgaagtcactattcagaagctgatagagttcag 17017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 3170946 - 3171002
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  3170946 ctgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 3171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 3181549 - 3181604
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  3181549 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 3181604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 36099863 - 36099918
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  36099863 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 36099918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 9750097 - 9750044
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  9750097 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 9750044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 10256276 - 10256328
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  10256276 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 10256328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 23160940 - 23160888
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23160940 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23160888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 28379141 - 28379197
Alignment:
Q  114 tgaaggtgagaaaaacacaaga-gagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| | ||| |||  ||||||||||| |||||||||||    
T  28379141 tgaaggtgagaaaaacacaagagggggggggggggttgaattgtgttttctttttct 28379197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 52351540 - 52351484
Alignment:
Q  114 tgaaggtgagaaaaacacaagaga-gggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||||| ||| |||  || |||||||| |||||||||||    
T  52351540 tgaaggtgagaaaaacacaagagagggggggggggtcgaattgtgttttctttttct 52351484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 24838285 - 24838398
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  24838285 ctgaaggtgagaaaaacacaagag-gggtggggggttgaattgtggtttctttttcttctcctaaaactgaagtcactattcagaacctgatagagttca 24838383  T
Q  213 gcttctgaagtgatg 227  Q
    |||||||||||||||    
T  24838384 gcttctgaagtgatg 24838398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 24843388 - 24843493
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    ||||||||||||||||||||||  |||   || |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  24843388 tgaaggtgagaaaaacacaagaacggg---ga-gttgaattgtggtttctttttcttctcctaaaactgaattcactgttcagaacctgatatagttcag 24843483  T
Q  214 cttctgaagt 223  Q
    ||||||||||    
T  24843484 cttctgaagt 24843493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 10899417 - 10899320
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    ||||||||| ||||||||||||| | || |||   |||||||||| | |||||||||||||||||||||||  ||||||  ||||| |||||| ||||||    
T  10899417 ctgaaggtgggaaaaacacaagaaatgggggg---ttgaattgtgttgtctttttcttctcctaaaactgagtttactgagcagaagctgatatagttca 10899321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 20567415 - 20567490
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatg-----ttgaattgtggtttctttttcttctcctaaaactga 183  Q
    |||||||||||||||||||||||| ||| |||  |     |||||||||| |||||||||||||||||||||||||    
T  20567415 ctgaaggtgagaaaaacacaagagggggggggggggggggttgaattgtgttttctttttcttctcctaaaactga 20567490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 41122520 - 41122473
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgat 226  Q
    |||||||| |||| |||||| | |||||||||||||||||||||||||    
T  41122520 actgaagtcactgatcagaagcagatagagttcagcttctgaagtgat 41122473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 22271353 - 22271403
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatgat 229  Q
    |||||||| |||| ||| || | ||||||||||||||||||||||||||||    
T  22271353 actgaagtcactgatcataagcagatagagttcagcttctgaagtgatgat 22271403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 24415873 - 24415821
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  24415873 tgaaggtgagaaaaacacaagaaagggggg---gttgaattgtgttttctttttct 24415821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 1862 - 1971
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    ||||||||||||||||||||||| |||| ||    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1862 ctgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggtttctttttcttctcttaaaactgaagttactgttcagatcctgatagagttca 1956  T
Q  213 gcttctgaagtgatg 227  Q
     ||||||||||||||    
T  1957 acttctgaagtgatg 1971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 34637703 - 34637809
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    |||||||||||||||||||||| ||||| |||   |||||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  34637703 ctgaaggtgagaaaaacacaag-gaggggggg---ttgaattgtgttttctttttcttctcctaaaactgaaatcaccgttcagaacctgatagagttca 34637798  T
Q  213 gcttctgaagt 223  Q
    |||||||||||    
T  34637799 gcttctgaagt 34637809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 2157211 - 2157117
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    ||||||||||||||||||||||      |||| ||||||||||| |||||||||||||||||||||||||||| | || |||||| ||||||||||||||    
T  2157211 tgaaggtgagaaaaacacaagaa-----gggaggttgaattgtgttttctttttcttctcctaaaactgaagtcattgatcagaagctgatagagttcag 2157117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 14446305 - 14446358
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  14446305 ctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 14446358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 11208957 - 11208905
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||  |||| ||||||||||| |||||||||||    
T  11208957 tgaaggtgagaaaaacacaaga-agg--gggaggttgaattgtgttttctttttct 11208905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 12396222 - 12396328
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    ||||||||| ||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  12396222 ctgaaggtgggaaaaacacaaga-aggggggg---ttgaattgtggtttctttttcttctcctaaaactgaagttatttttcagaacctgatagagttta 12396317  T
Q  213 gcttctgaagt 223  Q
    |||||||||||    
T  12396318 gcttctgaagt 12396328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 14078292 - 14078198
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    ||||||||||||||||||||||   || |||||  |||||||||||||||||||||||||||||||||||||| |||| ||| ||  ||||||||||||    
T  14078292 tgaaggtgagaaaaacacaagaa--ggagggat--tgaattgtggtttctttttcttctcctaaaactgaagtcactgatcaaaagatgatagagttca 14078198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 15960289 - 15960185
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    ||||||||| |||||||||||| |||| | |  ||||||||||||||| ||||||||||||||| |||||||| |||| |||||| ||||||| ||||||    
T  15960289 tgaaggtgataaaaacacaaga-agggagagg-gttgaattgtggtttttttttcttctcctaatactgaagtcactgatcagaagctgatagtgttcag 15960192  T
Q  214 cttctga 220  Q
     ||||||    
T  15960191 gttctga 15960185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 6252635 - 6252712
Alignment:
Q  147 gttgaattgtggtttctttttctt--ctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtga 225  Q
    ||||||||||||||||||||||||  ||||||   ||||||| ||||||||||| | ||||||||||||||||||||||||    
T  6252635 gttgaattgtggtttctttttcttttctccta---ctgaagtcactgttcagaagcagatagagttcagcttctgaagtga 6252712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 15961550 - 15961477
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctga 220  Q
    |||||||||||||||| |||||||||||||||| |||||| || |  ||||| ||||||||||| |||||||||    
T  15961550 gttgaattgtggtttcattttcttctcctaaaattgaagtcaccgaccagaagctgatagagtttagcttctga 15961477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 19198789 - 19198731
Alignment:
Q  162 ctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctga 220  Q
    |||||| ||||||||||||||||||||||| ||| || |||||||||||||| ||||||    
T  19198789 cttttttttctcctaaaactgaagttactgatcataagctgatagagttcaggttctga 19198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 40799085 - 40799140
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttct 172  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||    
T  40799085 tgaaggtgagaaaaacacaaga-agggtggg--gttgaattgtgttttctttttcttct 40799140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 6174522 - 6174599
Alignment:
Q  147 gttgaattgtggtttctttttctt--ctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtga 225  Q
    ||||| ||||||||||||||||||  ||||||    |||||| ||||||||||| | ||||||||||||||||| ||||||    
T  6174522 gttgagttgtggtttctttttcttttctcctat---tgaagtcactgttcagaagcagatagagttcagcttctaaagtga 6174599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 9381493 - 9381439
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  9381493 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 9381439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 10849783 - 10849850
Alignment:
Q  147 gttgaattgtggttt-ctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    ||||||||||| ||| ||||||||||||||||||||||  | |||| ||| || ||||||||||||||    
T  10849783 gttgaattgtgtttttctttttcttctcctaaaactgagttcactgatcataagctgatagagttcag 10849850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 12901264 - 12901197
Alignment:
Q  146 tgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||| |||||||||||||| ||||||  ||| | || | |||||| ||||||||||||||    
T  12901264 tgttgaattgtgttttctttttcttcttctaaaaacgaattcaccgatcagaagctgatagagttcag 12901197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 14006879 - 14006958
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaac 199  Q
    ||||||||||||||||||||||  |||      ||||||||||| |||| |||||||||||||||| |||| | ||| ||||||||    
T  14006879 tgaaggtgagaaaaacacaagaagggg------gttgaattgtgttttccttttcttctcctaaaattgaaatcactattcagaac 14006958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 13076293 - 13076345
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  13076293 tgaaggtgagaaaaacacaagaaagggggg---gttgaattgtgttttctttttct 13076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 8784669 - 8784721
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8784669 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9535009 - 9535061
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||| ||||| |||  ||||||||||| |||||||||||    
T  9535009 tgaaggtgagaaaaacacaag-gaggggggg--gttgaattgtgttttctttttct 9535061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 20724299 - 20724347
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||||| |||| |||||| | |||||| |||||||||||||||||||    
T  20724299 actgaagtcactgatcagaagcagatagatttcagcttctgaagtgatg 20724347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 28325685 - 28325633
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  28325685 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 28325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 39371452 - 39371504
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  39371452 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 39371504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 51990026 - 51989972
Alignment:
Q  111 agctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  51990026 agctgaaggtgagaaaaacacaaga-agggggg---gttgaattgtgttttctttttct 51989972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 16376289 - 16376181
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||||||||||||| |||| ||    ||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||||||     
T  16376289 tgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggtttctttttcttctcctaaaactgaaatcgctgttcacaacctgatagagttcaa 16376195  T
Q  214 cttctgaagtgatg 227  Q
    ||||||||||||||    
T  16376194 cttctgaagtgatg 16376181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 23772372 - 23772432
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcc 174  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  23772372 tgaaggtgagaaaaacacaagaggggggggggtgttgaattgtggtttctttttcttctcc 23772432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 33561183 - 33561127
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt 170  Q
    ||||||||||||||||||||||  |||||||  ||||||||||| || |||||||||    
T  33561183 tgaaggtgagaaaaacacaagaaggggtggggggttgaattgtgtttgctttttctt 33561127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 36077347 - 36077400
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  36077347 tgaaggtgagaaaaacacaagaaaggggggg--gttgaattgtgttttctttttct 36077400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 17442820 - 17442761
Alignment:
Q  108 caaagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttcttttt 167  Q
    |||| |||||||||||||||||||||||| ||| |||  ||||||||||| | |||||||    
T  17442820 caaatctgaaggtgagaaaaacacaagaggggggggggggttgaattgtgttgtcttttt 17442761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 29378756 - 29378807
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttcttttt 167  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |||||||||    
T  29378756 tgaaggtgagaaaaacacaagaggggggggg--gttgaattgtgttttcttttt 29378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 23470330 - 23470277
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23470330 ctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23470277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 23290312 - 23290364
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23290312 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23290364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 23363538 - 23363594
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggat-gttgaattgtggtttctttttct 169  Q
    |||||||||||||||||| |||| ||| ||| | ||||||||||| |||||||||||    
T  23363538 tgaaggtgagaaaaacacgagaggggggggggtggttgaattgtgttttctttttct 23363594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 43644136 - 43644184
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||| | |||| |||||| | ||||||||||||||||||||||||||    
T  43644136 actgaattcactgatcagaagcagatagagttcagcttctgaagtgatg 43644184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 14357567 - 14357647
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  14357567 gttgaattgtggtttctttctcgtctcctaaaactgaagtgactgttcagaacctgatagagttcggcttctgaagtgatg 14357647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 10249156 - 10249232
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagt 223  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||||||| |||||||||||||||||||||||    
T  10249156 gttgaattgtggtttctttctcttctcctaaaaccgaattcactattcagaacttgatagagttcagcttctgaagt 10249232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 15560509 - 15560576
Alignment:
Q  159 tttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    ||||||| | |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  15560509 tttctttgttttctcctaaa-ctgaagtcactgttcagaacctaatagagttcagcttctgaagtgatg 15560576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 7136306 - 7136366
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgataga 207  Q
    |||||||| || |||||||||||||||||||||| ||||||| || |||||| ||||||||    
T  7136306 gttgaattttgttttctttttcttctcctaaaaccgaagttaatgatcagaagctgataga 7136366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 22089540 - 22089588
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||||| |||| |||||| | ||||||||||||||||||||||||||    
T  22089540 actgaagtcactgatcagaagcagatagagttcagcttctgaagtgatg 22089588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 29042499 - 29042445
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  29042499 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 29042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 3189217 - 3189165
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  3189217 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 3189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 11900364 - 11900412
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||| | ||||||||||| | |||||||||||| |||||||||||||    
T  11900364 actgaaatcactgttcagaagcagatagagttcagattctgaagtgatg 11900412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 17058026 - 17057924
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |  |||||||||||||||||| ||   | |||| ||||||  ||||||| |||||    
T  17058026 tgaaggtgagaaaaacacaaga-agggggg---gttgaattgtgttagctttttcttctcctaaaattgtgttcactgatcagaagttgatagatttcag 17057931  T
Q  214 cttctga 220  Q
     ||||||    
T  17057930 attctga 17057924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 19143846 - 19143791
Alignment:
Q  114 tgaaggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||| |||||| |||  ||||||||||| |||||||||||    
T  19143846 tgaaggtgagaaaaacacaagaagaggg-ggggggttgaattgtgttttctttttct 19143791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 29030384 - 29030331
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  29030384 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 29030331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 87592 - 87666
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagt 223  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  87592 gttgaattgtggtttctttttcttctcctaaaactgaagtcactgttc--aacctgatagagttcagcttctgaagt 87666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 7488829 - 7488758
Alignment:
Q  152 attgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  7488829 attgtggtttctttttcttctcctaaaactgaagtcactgttcagaacctgatagaattcagcttatgaagt 7488758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 14304732 - 14304672
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgataga 207  Q
    ||||||||||||||||||||||||||||||||||| |||| | || | |||| ||||||||    
T  14304732 gttgaattgtggtttctttttcttctcctaaaactaaagtcattgattagaagctgataga 14304672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 16409001 - 16409107
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    ||||||||||||||||| ||||    | |||| ||||||||||| ||||||||| ||||| ||||||  || | | |||||| || ||||||||||||||    
T  16409001 tgaaggtgagaaaaacataaga---tgggggaggttgaattgtgttttctttttattctcttaaaacataattcattgttcaaaatctgatagagttcag 16409097  T
Q  214 cttctgaagt 223  Q
    ||||| ||||    
T  16409098 cttctaaagt 16409107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 601987 - 602040
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |||||||||||    
T  601987 tgaaggtgagaaaaacacaagaggggggggg--gttgaattgtgttttctttttct 602040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 11052633 - 11052689
Alignment:
Q  110 aagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  11052633 aagctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 11052689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 45931086 - 45931031
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  45931086 ctgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 45931031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1775516 - 1775571
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1775516 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 1775571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1986921 - 1986976
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1986921 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 1986976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1997544 - 1997597
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1997544 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 1997597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 8002981 - 8002929
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8002981 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8002929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 8013626 - 8013574
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8013626 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8013574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 42865211 - 42865263
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  42865211 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 42865263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 42875836 - 42875889
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  42875836 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 42875889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 76448 - 76556
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||||||||||||| |||| |     |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| |||||||    
T  76448 tgaaggtgagaaaaacacaaga-agggggt----ttgaattgtggtttctttatgttctcctaaaactgaagtcactgttcagaacctgatacagttcag 76542  T
Q  214 cttctgaagtgatg 227  Q
    ||||| ||| ||||    
T  76543 cttctaaagggatg 76556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 12347282 - 12347382
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt-ctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    ||||||||||||||||||||||  | | |||   ||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||    
T  12347282 tgaaggtgagaaaaacacaagaatgaggggg---ttgaattgtggtttctttttctttctcctaaaactgaagtcactattcaaaacctgatagagttca 12347378  T
Q  213 gctt 216  Q
    ||||    
T  12347379 gctt 12347382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 7811228 - 7811304
Alignment:
Q  147 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagt 223  Q
    ||||||||||| ||||||||||||| |||||||||||| | |||||||||||| ||||||| || ||||||||||||    
T  7811228 gttgaattgtgttttctttttcttcacctaaaactgaattcactgttcagaacttgatagaatttagcttctgaagt 7811304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 25591856 - 25591928
Alignment:
Q  151 aattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagt 223  Q
    ||||||| |||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||| |||||    
T  25591856 aattgtgttttctttttcttctcccaaaactgaattcactattcagaacctgatagagttcagcttccgaagt 25591928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 25929711 - 25929792
Alignment:
Q  147 gttgaattgtggtttctttttctt--ctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    ||||||||||||||||||||||||  ||||||||  |||| | |||||||||||||||||| |||||||||||||||||||||    
T  25929711 gttgaattgtggtttctttttcttttctcctaaat-tgaattcactgttcagaacctgatatagttcagcttctgaagtgatg 25929792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 30451942 - 30451855
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgata 205  Q
    ||||||||||||||||||||||| |||| ||    |||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||    
T  30451942 ctgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggttaatttttcttctcctaaaactgaagtcactgttcagaacttgata 30451855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 23295989 - 23296090
Alignment:
Q  116 aaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagct 215  Q
    |||||||||||||||||||| ||||  ||| ||| ||||||||||||||||| ||||||||| |||||| | |||||||||||||| |||||||||| ||    
T  23295989 aaggtgagaaaaacacaaga-aggg--gga-gtttaattgtggtttctttttattctcctaagactgaattcactgttcagaacctaatagagttcaact 23296084  T
Q  216 tctgaa 221  Q
    | ||||    
T  23296085 tttgaa 23296090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 32335030 - 32335129
Alignment:
Q  116 aaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagct 215  Q
    |||||||||||||||||||| |||| |     |||||||||| |  ||||||||||||||||||||||| | |||| |||||||||| ||||||||| ||    
T  32335030 aaggtgagaaaaacacaagaaaggggg-----ttgaattgtgttagctttttcttctcctaaaactgaattcactgatcagaacctggtagagttcaact 32335124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 17304223 - 17304107
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttc---tcctaaaactgaagttactgttcagaacctgatagagt 209  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| |  ||||||||||   | ||   |||||||| |||| |||||| | ||||||||    
T  17304223 ctgaaggtgagaaaaacacaaga-agggtggggggttgaattgtgttagctttttcttcgttttctcctactgaagtcactgatcagaagcagatagagt 17304125  T
Q  210 tcagcttctgaagtgatg 227  Q
    ||||||||||||||||||    
T  17304124 tcagcttctgaagtgatg 17304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 16463568 - 16463510
Alignment:
Q  162 ctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctga 220  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||||||    
T  16463568 ctttttcttctcctaaaactgaagttactaatcagaagctgatagagttcaggttctga 16463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 17446594 - 17446501
Alignment:
Q  113 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttc 211  Q
    ||||||||||||||||||||||| ||      | ||||||||||| |  ||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  17446594 ctgaaggtgagaaaaacacaagaaaga-----aggttgaattgtgttaactttttcttctcctaaaactgaattcactgatcagaacctgatagagttc 17446501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 21034236 - 21034335
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    ||||||||||||||||||||||  ||| |     |||||||||| ||| |||||  |||||||||||| ||||||||| ||| ||  |||||||||||||    
T  21034236 tgaaggtgagaaaaacacaagaacggggg-----ttgaattgtgtttttttttt--tctcctaaaactaaagttactgatcataatttgatagagttcag 21034328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 27383785 - 27383839
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27383785 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27383839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 27474169 - 27474223
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27474169 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 27503667 - 27503721
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27503667 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27503721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 24717779 - 24717721
Alignment:
Q  114 tgaaggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttcttc 171  Q
    ||||||||||||||||||||| || ||| |||  ||||||||||| |||||||||||||    
T  24717779 tgaaggtgagaaaaacacaagaagggggaggggggttgaattgtgttttctttttcttc 24717721  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1902083 - 1902136
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1902083 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 1902136  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 7762898 - 7762946
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||| | |||| |||||| | ||||||||||||||||||||||||||    
T  7762898 actgaaatcactgatcagaagcagatagagttcagcttctgaagtgatg 7762946  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 25678755 - 25678815
Alignment:
Q  109 aaagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||| ||||||||||||||||||||||  ||| |||  ||| ||||||| |||||||||||    
T  25678755 aaagttgaaggtgagaaaaacacaagaagggggggggggttcaattgtgttttctttttct 25678815  T

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Target: scaffold0009 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 267952 - 268023
Alignment:
Q  155 gtggtttctttttctt--ctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagtga 225  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  267952 gtggtttctttttcttttctcctaaa-ctgaagtcactgttcagaacctgataaagttcagcttctgaagtga 268023  T

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Target: scaffold0201 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 18400 - 18495
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttca 212  Q
    ||||||||||||||||||| | || || ||   ||||||||||| |||||||||||||||||||||| ||  || ||| |||||| |||||||||||||    
T  18400 tgaaggtgagaaaaacacaggtgaaggggg---gttgaattgtgttttctttttcttctcctaaaaccgagtttcctgatcagaagctgatagagttca 18495  T

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Target: scaffold0598 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 2707 - 2587
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatg----ttgaattgtggtttctttttcttc---tcctaaaactgaagttactgttcagaacctgatag 206  Q
    ||||||||||||||||||||||| ||| |||  |    |||||||||| || ||||||||||   | ||   |||||||| ||||||||||| | |||||    
T  2707 tgaaggtgagaaaaacacaagaggggggggggggggggttgaattgtgtttgctttttcttcgttttctcctactgaagtcactgttcagaagcagatag 2608  T
Q  207 agttcagcttctgaagtgatg 227  Q
    |||||||||||||||||||||    
T  2607 agttcagcttctgaagtgatg 2587  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 9921 - 10025
Alignment:
Q  117 aggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagct 215  Q
    |||||||||||||||||| | |||| |||  |||||||| || ||||||||||||||| |||||||||| | |||| | ||||  ||| ||||||||| |    
T  9921 aggtgagaaaaacacaaggaaaggggggggggttgaattttgttttctttttcttctcttaaaactgaattcactgattagaagttgaaagagttcaggt 10020  T
Q  216 tctga 220  Q
    |||||    
T  10021 tctga 10025  T

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Target: scaffold0273 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 22260 - 22321
Alignment:
Q  162 ctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcagcttctgaagt 223  Q
    |||||||||||||||||||||||   ||||||||||  || |||||||||| ||||||||||    
T  22260 ctttttcttctcctaaaactgaaaccactgttcagatgctaatagagttcaacttctgaagt 22321  T

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Target: scaffold0398 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 13360 - 13307
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt 170  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| ||||||||||||    
T  13360 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttctt 13307  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 2987 - 2930
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttc 171  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |  ||||||||||    
T  2987 tgaaggtgagaaaaacacaagaggggggggggggttgaattgtgttagctttttcttc 2930  T

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Target: scaffold1507 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1507
Description:

Target: scaffold1507; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 306 - 254
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  306 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 254  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 321 - 269
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 169  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  321 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 13254 - 13302
Alignment:
Q  179 actgaagttactgttcagaacctgatagagttcagcttctgaagtgatg 227  Q
    |||||||| |||| |||||| | ||||||||||| ||||||||||||||    
T  13254 actgaagtcactgatcagaagcagatagagttcaacttctgaagtgatg 13302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 58775 - 58866
Alignment:
Q  114 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagaacctgatagagttcag 213  Q
    |||||||||||||||||||||| ||||| |   |||||| |||| |||||||||| ||| ||    ||||| |||||| |||||| ||||||||||||||    
T  58775 tgaaggtgagaaaaacacaaga-agggttg---gttgaactgtgttttctttttcgtcttct----ctgaatttactgatcagaatctgatagagttcag 58866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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