View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0457_low_27 (Length: 231)

Name: NF0457_low_27
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0457_low_27
NF0457_low_27
[»] chr4 (2 HSPs)
chr4 (21-201)||(16841309-16841489)
chr4 (35-199)||(24216181-24216345)
[»] chr5 (14 HSPs)
chr5 (21-201)||(37437251-37437431)
chr5 (21-201)||(37698343-37698523)
chr5 (27-201)||(37713174-37713348)
chr5 (35-201)||(37595880-37596049)
chr5 (39-199)||(37704220-37704380)
chr5 (27-198)||(37391377-37391548)
chr5 (28-199)||(37641433-37641604)
chr5 (27-201)||(37534650-37534824)
chr5 (78-198)||(37380810-37380930)
chr5 (35-198)||(37441499-37441659)
chr5 (102-199)||(37825465-37825562)
chr5 (28-176)||(37411743-37411891)
chr5 (78-198)||(37399290-37399410)
chr5 (35-201)||(37430307-37430473)
[»] chr3 (1 HSPs)
chr3 (27-195)||(14554615-14554780)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 16841309 - 16841489
Alignment:
Q  21 atcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcaca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841309 atcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcaca 16841408  T
Q  121 cactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841409 cactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 16841489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 24216181 - 24216345
Alignment:
Q  35 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 134  Q
    ||||| ||||| |||||||||||| |  |||||  |||  || ||||||||||| |  || || |||||||||| ||||||||  ||||||  |||||||    
T  24216181 ctctatatgggttccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattct 24216280  T
Q  135 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatct 199  Q
    ||||||| |||||||| ||||| |||||||| ||||| |||||||||  ||||||||||||||||    
T  24216281 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatct 24216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 37437431 - 37437251
Alignment:
Q  21 atcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcaca 120  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   || || ||||||||||||||||| | ||    
T  37437431 atcggtgtaagttgctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactaccca 37437332  T
Q  121 cactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
    |||||| ||||| |||||||| ||||||| |||||| || ||||| ||||||||||| |||  | ||||||||||||||||    
T  37437331 cactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctca 37437251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 37698523 - 37698343
Alignment:
Q  21 atcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcaca 120  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||| |||||  || || |||||||||| ||||||||  |    
T  37698523 atcggtgtaagttgctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttccta 37698424  T
Q  121 cactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
    |||  | ||||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| |||||    
T  37698423 cacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctca 37698343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 37713348 - 37713174
Alignment:
Q  27 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 126  Q
    ||||||| ||||||||||| ||||||||||||   ||||||| |||| || ||||||| ||||   || || |||||||||| |||||||| ||||||||    
T  37713348 gtaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacacttt 37713249  T
Q  127 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
     ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  37713248 ctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 37713174  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 37596049 - 37595880
Alignment:
Q  35 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctt--tgt-gctgctgcttactcactttacttcacacactttgtcat 131  Q
    ||||||||||| ||||||||||||   ||||||| |||| || ||||||| |||||  ||| | ||||||||||||| ||||||||  ||||||| ||||    
T  37596049 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcat 37595950  T
Q  132 tctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
    | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  37595949 tgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 37595880  T

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Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 37704380 - 37704220
Alignment:
Q  39 aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa 138  Q
    ||||| |||||||||||||| | ||||||| |||| |  |||||||||||||  |  ||||||||||||| ||||||||  ||||||| ||||| ||||     
T  37704380 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 37704281  T
Q  139 ccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatct 199  Q
    ||||||||| ||||| || |||||||| |||||| ||||||||||||||||||||||||||    
T  37704280 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatct 37704220  T

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Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 37391377 - 37391548
Alignment:
Q  27 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 126  Q
    ||||||||||||||||||||||||| |||||| | ||||||| |||| || ||||||||||| |  || || |||||||||| ||||||||  | ||| |    
T  37391377 gtaagttgctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactct 37391476  T
Q  127 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatc 198  Q
     ||||| |||||||  ||||| |||||||| ||| |||| |||||||||||||||| |||||||||||||||    
T  37391477 ctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 37641604 - 37641433
Alignment:
Q  28 taagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttg 127  Q
    |||||| ||||||||||| ||||||||||||   ||||||| |||| || ||||||| || ||  || || || ||||||| ||||||||  |||||||     
T  37641604 taagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttc 37641505  T
Q  128 tcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatct 199  Q
    ||| | |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  37641504 tcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatct 37641433  T

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Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 37534824 - 37534650
Alignment:
Q  27 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 126  Q
    ||||||| ||||||||||| ||||||||||||   ||||||| |||| || ||||||| |||||  || || || ||||||| ||||||||  |||||||    
T  37534824 gtaagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacacttt 37534725  T
Q  127 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
     ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||| ||||||||||||    
T  37534724 ctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctca 37534650  T

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Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 37380810 - 37380930
Alignment:
Q  78 ttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactc 177  Q
    |||||||||||||  || || |||||||||| |||||||| |||||||| ||||| |||||||||||||| |  ||||| ||||||||||||||||||||    
T  37380810 ttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactc 37380909  T
Q  178 attttctgtcaacacttcatc 198  Q
    ||||||| |||||||||||||    
T  37380910 attttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 37441659 - 37441499
Alignment:
Q  35 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 134  Q
    ||||||||||| |||||||||||| | ||||||| |||| || ||||| |||||||  || ||||||||||||| ||||||||  | ||||| ||| | |    
T  37441659 ctctaaatggg-tccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgt 37441561  T
Q  135 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatc 198  Q
    | ||| ||||||||| |||||| |||||||| |||||||||||  |||| ||||||||||||||    
T  37441560 gaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T

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Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 37825562 - 37825465
Alignment:
Q  102 ttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatct 199  Q
    ||||||| ||||||||  ||||||| ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  37825562 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatct 37825465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 37411743 - 37411891
Alignment:
Q  28 taagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttg 127  Q
    ||||||||||||||||||||||| |||| || | ||| | | |||| || |||||||||||||  |||||||| ||||||| ||||||||  |||| ||     
T  37411743 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttc 37411842  T
Q  128 tcattctgcaaccaacatgacagctctgctttgttacatttcaaaaact 176  Q
    ||||| |||||| | |||||||||| ||| |||||||| ||||| ||||    
T  37411843 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 37411891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 37399290 - 37399410
Alignment:
Q  78 ttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactc 177  Q
    |||||||||||||  || || || ||||||| ||||||||| ||||||| ||| | |||||||| ||||||| |||||| |||||||| |||||||| ||    
T  37399290 ttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattc 37399389  T
Q  178 attttctgtcaacacttcatc 198  Q
    ||||| |||  ||||||||||    
T  37399390 attttttgttgacacttcatc 37399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 37430473 - 37430307
Alignment:
Q  35 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 134  Q
    ||||||||||||||||||| | || | || |||| | ||||| |||||||||||||  || ||||||| ||||  ||||||||  | || || ||| | |    
T  37430473 ctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgt 37430374  T
Q  135 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 201  Q
    |||| || |||||||| ||||| |||||||| ||||| || ||||||| | ||||||||||||||||    
T  37430373 gcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctca 37430307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 14554780 - 14554615
Alignment:
Q  27 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 126  Q
    ||||||| ||||||||||| |||||||||||| | ||||||| |||| || ||||||| ||||   |  || |||||||||| ||||||||  | |||||    
T  14554780 gtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttct---tattgttgcttactcattttacttcctatacttt 14554684  T
Q  127 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 195  Q
     ||||| |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||    
T  14554683 ctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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