View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_3 (Length: 481)
Name: NF0457_low_3
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 169 - 390
Target Start/End: Original strand, 9411795 - 9412019
Alignment:
| Q |
169 |
cagaatccaagagtattctacaaacactcatgcaacaaaatacacaaaaaaggtctaacaccaaaa---------ctcataagccaaaatccagtatcta |
259 |
Q |
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| T |
9411795 |
cagaatccaagagtatactacaaacactcatgcaacaaaatatacaaaaagggtctaacaccaaaactcataaaactcataagccaaaatccagtatcta |
9411894 |
T |
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| Q |
260 |
tatctatctcagtaccctacaccctagaaccatatccattaccatttgttccattcaatacttgcaacttgttctctgatttcttcctcttgatcacaat |
359 |
Q |
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| T |
9411895 |
tatctatctcagtatcctacaccctagaaccatatccattaccatttgttccattcattccttgcaacttgttctctgatttcttcctcttgatca---- |
9411990 |
T |
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| Q |
360 |
gtcaatgatccatgtgtaagcttccaaaagt |
390 |
Q |
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| T |
9411991 |
--caatgatccatgtgtaagcttccaaaagt |
9412019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 25123901 - 25123953
Alignment:
| Q |
29 |
atctagaaggttatatccatctacaaagaaaaggctactacagcagatataag |
81 |
Q |
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| T |
25123901 |
atctagaaggttatatccatctacaaagaaaaggctactacaacagatataag |
25123953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 808915 - 808863
Alignment:
| Q |
29 |
atctagaaggttatatccatctacaaagaaaaggctactacagcagatataag |
81 |
Q |
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| T |
808915 |
atctagaaggtcatatccatctacaaagaaaaggctactacaacagatataag |
808863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 807728 - 807644
Alignment:
| Q |
84 |
aatgttaatcatacaccaaatctttttgatatatggcaaatagctatacagtatatttctcagtctatataatgtaagtaacatcca |
170 |
Q |
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| T |
807728 |
aatgttaatcatacacaaaatcttgttgatat--ggcaactaggtatacaatatatttatcaatctatataaattaagtaacatcca |
807644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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