View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_4 (Length: 391)
Name: NF0457_low_4
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 33 - 335
Target Start/End: Original strand, 47731112 - 47731415
Alignment:
| Q |
33 |
acatctttaaccgacagcaacatatcatgaatgtcaatgcagggagtaagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaag |
132 |
Q |
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| T |
47731112 |
acatctttaactgacagcaacatatcatgaatgtcaatgcagggagcaagggactctatgaaacgaagagaacaccaagggcatgaccagaaagaggaag |
47731211 |
T |
|
| Q |
133 |
aac-tgacccattcatagaaatgtagctcattctgcatatgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagc |
231 |
Q |
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||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
47731212 |
aacctgacccgttcatagaaatgtagcccattctgcatatgatgagacttttcttcattgtgtgtgtgtgattgaacccattctaagcacttgtggcagc |
47731311 |
T |
|
| Q |
232 |
aagcaggatttaatcaatctgattttttctctaacgacgacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
331 |
Q |
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| T |
47731312 |
aagcaggatttaatcaatctgattttttctctaacgacgacactataaattggatcaagaacagggtgatggggccttactatttcctttttgcagcaac |
47731411 |
T |
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| Q |
332 |
aatt |
335 |
Q |
| |
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|||| |
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| T |
47731412 |
aatt |
47731415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 331
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
| Q |
170 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
269 |
Q |
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| T |
50823520 |
atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag |
50823423 |
T |
|
| Q |
270 |
gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
331 |
Q |
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| T |
50823422 |
gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac |
50823362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 331
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
| Q |
179 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata |
278 |
Q |
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|||||||||| || |||||||||||| ||||||||||| ||||||| | || | || ||||||||||| ||| ||||||| || || ||||||||| |
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| T |
26334526 |
cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata |
26334429 |
T |
|
| Q |
279 |
aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
331 |
Q |
| |
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| T |
26334428 |
aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac |
26334376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 47731491 - 47731538
Alignment:
| Q |
333 |
attcaaggtatgattgataccctcaaagcttcttatcctttcatctct |
380 |
Q |
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| T |
47731491 |
attcaaggtatggttgataccctcaaagcttcttatcctttcatctct |
47731538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 24873209 - 24873130
Alignment:
| Q |
56 |
atcatgaatgtcaatgcagggagtaagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac |
135 |
Q |
| |
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|||||||||||||||| |||| | ||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
24873209 |
atcatgaatgtcaatgtagggtgcaagggaccctatgaaaccaagagaactccaagggcaagaccaaaaagaggaagaac |
24873130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 335
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
| Q |
170 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
269 |
Q |
| |
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||||||||||||||||||||| | ||| ||||| | ||||||||||| || ||| ||| || | | |||||||||| ||||||||| ||| || | |
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| T |
24873567 |
atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa |
24873663 |
T |
|
| Q |
270 |
gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt |
335 |
Q |
| |
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| T |
24873664 |
gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt |
24873730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
| Q |
298 |
tgatggggccttactatttcctttttgcagcaacaatt |
335 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
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| T |
43709297 |
tgatgggcccttactatttcctttttgcagcaacaatt |
43709260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 43709184 - 43709139
Alignment:
| Q |
333 |
attcaaggtatgattgataccctcaaagcttcttatcctttcatct |
378 |
Q |
| |
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|||||||||||| ||||||||||| |||||| |||||||| ||||| |
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| T |
43709184 |
attcaaggtatggttgataccctctaagcttgttatccttccatct |
43709139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 27154928 - 27154968
Alignment:
| Q |
333 |
attcaaggtatgattgataccctcaaagcttcttatccttt |
373 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||| |
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| T |
27154928 |
attcaaggtatggttgacaccctcaaagcttcttatccttt |
27154968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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