View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_5 (Length: 384)
Name: NF0457_low_5
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 2928169 - 2928465
Alignment:
| Q |
21 |
agcacagaaaaaagccataccagatcattgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggctactgatc |
120 |
Q |
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| T |
2928169 |
agcacagaaaaaagccataccagatcactgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggccactgatc |
2928268 |
T |
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| Q |
121 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928269 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
2928368 |
T |
|
| Q |
221 |
tctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacaca |
317 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928369 |
tctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacaca |
2928465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 2310703 - 2310612
Alignment:
| Q |
220 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggt |
311 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || || ||||||| |
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| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggtagtcgatcgataagtggt |
2310612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 2310985 - 2310927
Alignment:
| Q |
131 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
189 |
Q |
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|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2310985 |
ctataaggaagaataattaacataaacagagccattgctcataaattcttaaaatattt |
2310927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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