View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_6 (Length: 371)
Name: NF0457_low_6
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 111 - 361
Target Start/End: Complemental strand, 41842249 - 41841999
Alignment:
| Q |
111 |
ttgttcactgttttagaaacttattttgtctggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggtgattgatt |
210 |
Q |
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| T |
41842249 |
ttgttcactgttttagaaacttattttgtctggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggggattgatt |
41842150 |
T |
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| Q |
211 |
ccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatgttgttcttagagaagagtattacgatgaagataatttagcgaa |
310 |
Q |
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| T |
41842149 |
ccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatcttcttcttagagaagagaattactatgaagattatttagctaa |
41842050 |
T |
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| Q |
311 |
aatgagaggaactcaaagtgaaaggatgaagatcttataccattcctcatt |
361 |
Q |
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| T |
41842049 |
aatgagaggaactcaaagtgaaaggatgaagatcttataccattcctcatt |
41841999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 41842357 - 41842269
Alignment:
| Q |
30 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
118 |
Q |
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| T |
41842357 |
gaaacagcctaacaaaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
41842269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 350
Target Start/End: Original strand, 42090224 - 42090453
Alignment:
| Q |
117 |
actgttttagaaacttattttgtctggttactgtg--catatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggtgattgattccga |
214 |
Q |
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| T |
42090224 |
actgttttagaaacttgcttcatcttgttactgtgaacatatgttagatttgacaccatgaaaattgtgctacattgcgaacagtagggattgattccga |
42090323 |
T |
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| Q |
215 |
gaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatgttgttcttagagaagagtattacgatgaagataatttagcgaaaatg |
314 |
Q |
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| T |
42090324 |
gaaagagtattcgggaaagtttgctatagactgcagtgtgattcattcgc---tggttcttagaaaagagaattactgtgca---tatttagctaaaata |
42090417 |
T |
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| Q |
315 |
agaggaactcaaagtgaaaggatgaagatcttatac |
350 |
Q |
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| T |
42090418 |
ggaggtactcaaagtgaaaggatgaagatcttatac |
42090453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 42090111 - 42090198
Alignment:
| Q |
30 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
118 |
Q |
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| T |
42090111 |
gaaacagcccaacagaatagaaaa-agttgattcccatatcaccatttcatcctcaacaagttttcttgggttattattagttgttcac |
42090198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 11653109 - 11653021
Alignment:
| Q |
30 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
118 |
Q |
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| T |
11653109 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccgtttcatcctcaacaagatttcttgagttattgttagttgttcac |
11653021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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