View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0457_low_7 (Length: 359)
Name: NF0457_low_7
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 21346142 - 21345827
Alignment:
| Q |
22 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21346142 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
21346043 |
T |
|
| Q |
122 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21346042 |
tggagaattctccagatgctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
21345943 |
T |
|
| Q |
222 |
attttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21345942 |
attttattaaaatccatgaatgatgcgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
21345843 |
T |
|
| Q |
322 |
tgtggtggaattgatg |
337 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21345842 |
tgtggtggaattgatg |
21345827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 22872 - 22558
Alignment:
| Q |
22 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22872 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
22773 |
T |
|
| Q |
122 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22772 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgcgagtatgaacc |
22673 |
T |
|
| Q |
222 |
attttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22672 |
attttattaaaatccatgaatgattcgtcaagaattttacagagaatacgctggaagttgattgcatatggactgcttttctgttatac-ttatgattca |
22574 |
T |
|
| Q |
322 |
tgtggtggaattgatg |
337 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22573 |
tgtggtggaattgatg |
22558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 22 - 333
Target Start/End: Complemental strand, 29381216 - 29380906
Alignment:
| Q |
22 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29381216 |
catcatcaaaggatttaggtttacaaagtttgaatctgtttcacttttttgcattgtgcagatgataaagtaactgttttggagtcagaaaagcgcgcct |
29381117 |
T |
|
| Q |
122 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |
|
|
| T |
29381116 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgtgagtatgagcc |
29381017 |
T |
|
| Q |
222 |
attttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
321 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29381016 |
attttattaaaatccatgaatgatttgtcaagaattttaccgagaatacgctggaagtcgattgcatatggactgcttttctgttatac-ttatgattca |
29380918 |
T |
|
| Q |
322 |
tgtggtggaatt |
333 |
Q |
| |
|
||| ||||||| |
|
|
| T |
29380917 |
tgtcatggaatt |
29380906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1762 times since January 2019
Visitors: 3462