View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0457_low_8 (Length: 339)
Name: NF0457_low_8
Description: NF0457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0457_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 30409443 - 30409284
Alignment:
| Q |
80 |
gcacagactgactagttgggaatgggaagtgtatggttttcgttaagctaagccccctttgaatttgagttaaaagaaaacatctaaactctaaacacaa |
179 |
Q |
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| T |
30409443 |
gcacagactgactagttgggaatgggaagtgtatggttttcgttaagctaagccc--tttgaatttgagttaaaagaaaacatctaaactctaaacacaa |
30409346 |
T |
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| Q |
180 |
taaagtgttgcgttatttgaatatcaaaatacatacatcacattatgcagaggggtcatatc |
241 |
Q |
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| T |
30409345 |
taaagtgttgcgttatttgaatatcaaaatacatacatcacattatgcagaggggtcatatc |
30409284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 30411898 - 30411848
Alignment:
| Q |
137 |
tttgaatttgagttaaaa----gaaaacatctaaactctaaacacaataaa |
183 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30411898 |
tttgaatttgagttaaaatatagaaaacatctaaactctaaatacaataaa |
30411848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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