View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0458_high_2 (Length: 379)
Name: NF0458_high_2
Description: NF0458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0458_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 32 - 374
Target Start/End: Complemental strand, 824589 - 824247
Alignment:
| Q |
32 |
aaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgagataacatgcatactattcataatgtgttgggtacaatgtggatttatcta |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
824589 |
aaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgaggtaacatgcatactatttataatgtgttgggtacaatgtggatttatcta |
824490 |
T |
|
| Q |
132 |
tgcggagagacactgatgtagaaaatgctttccacataaaataagagcatgaacattgattcatatatgctcttgtcaatttgggtaagtctaagtttgt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
824489 |
tgcggagagacactgatgtagaaaatgctttccacataaaataagagcatgaacattgattcatatatgctcttgtcaatttgggtaagtctaagtttgt |
824390 |
T |
|
| Q |
232 |
ggagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
824389 |
ggagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgtggcagag |
824290 |
T |
|
| Q |
332 |
gatatcgtcaggtaaactgctgatagtatccatctgtgctgct |
374 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
824289 |
gatatcgtcaggtaaattgctgatagtatccatctgcgctgct |
824247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 990870 - 990989
Alignment:
| Q |
236 |
attgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggata |
335 |
Q |
| |
|
|||||||| ||| ||||| |||| |||||| |||||||||||||| ||||| ||||||| || ||| |||| ||||| |||||||||||| | ||||| |
|
|
| T |
990870 |
attgggaagataatgccagagattagtccacctcttggacaaaacgcttgtagcaactgcttcttttgtggatacaaatgagagaatgcggaaaaggatt |
990969 |
T |
|
| Q |
336 |
tcgtcaggtaaactgctgat |
355 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
990970 |
tcgtcgggcaaactgctgat |
990989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 1013092 - 1013181
Alignment:
| Q |
234 |
agattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatg |
323 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||| || | || ||||||||||||| || |||||| | | ||||||||||||| |
|
|
| T |
1013092 |
agattgggaacatgatgccataggtgaatccatctctttgatagaatgcttgttgcaactgattctttggttgtgagaaaagagagaatg |
1013181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 35766399 - 35766297
Alignment:
| Q |
250 |
gccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggatatcgtcaggtaaact |
349 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||| | | || ||||| ||||||||||||||| |||| || | |||||| |||||||| |
|
|
| T |
35766399 |
gccaaagatgagtccatctcttggacaaaacgcttgtggcaacggcctcttgggtggagacaaaagagagaatgtggcaaagaacatcgtctggtaaact |
35766300 |
T |
|
| Q |
350 |
gct |
352 |
Q |
| |
|
||| |
|
|
| T |
35766299 |
gct |
35766297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 22054600 - 22054516
Alignment:
| Q |
240 |
ggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgc |
324 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||| |||||| |||| || | |||||| | || ||||||||||||| |
|
|
| T |
22054600 |
ggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttgtaagtaaagagagaatgc |
22054516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 40639961 - 40639890
Alignment:
| Q |
233 |
gagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggt |
304 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||| || | || ||||||||||||| || |||||| |
|
|
| T |
40639961 |
gagattaggaacatggtgccatagatgaatccatctctttgaaagaatgcttgttgcaactgattctttggt |
40639890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 329 times since January 2019
Visitors: 3470