View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0458_low_1 (Length: 596)
Name: NF0458_low_1
Description: NF0458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0458_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 51 - 533
Target Start/End: Complemental strand, 52972114 - 52971632
Alignment:
| Q |
51 |
gttttatcattgttttcttcgttttgaatatctgcagtggatgtggatgtacccttattattattactatcatcaacataatggtgtcctatagtagcaa |
150 |
Q |
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| T |
52972114 |
gttttatcgttgttttcttcgttttgaatatctgcggtggatgtggatgtacccttattattattactatcatcaacataatggtgtcctatagtagcaa |
52972015 |
T |
|
| Q |
151 |
gataatcatctgaacaatattggtaaaacacttgctccaacgtcactttgtattcacatgcatatttaagataattcatgacataacgagtcaatggatg |
250 |
Q |
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| T |
52972014 |
gataatcatctgaacaatattggtaaaacacttgctccaacgtcactttgtattcacatgcatatttaagataattcatgacataacgagtcaatggatg |
52971915 |
T |
|
| Q |
251 |
aaccgctccatatgggacgggaatcctttcattatcacccttgatggagttttccaaatcataaaacatcgaaacgacagcctttattattccatgcttt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971914 |
aaccgctccatatgggacgggaatcctttcattatcacccttgatggagttttccaaatcataaaacatcgaaacgacagcctttattattccatgcttt |
52971815 |
T |
|
| Q |
351 |
gtcatagtcatctcatatgccaaatccttggcacattgctctaagccatcatcattaatgagtgtaatgacaggttccacgtcatccctcaaggtctcat |
450 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971814 |
gtcatagtcatctcgtatgccaaatccttggcacattgctctaaaccatcaccattaatgagtgtaatgacaggttccacgtcatccctcaaggtctcat |
52971715 |
T |
|
| Q |
451 |
acatatctaggaatttgaacaatttctctgatgatggcttggttaaaaccactgcttgagcaaaattgagaaaattgatgatg |
533 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971714 |
acatatctaggaatttgaacaatttctctgatgatggcttggttaaaaccactgcttgagcaaaattgagaaaattgatgatg |
52971632 |
T |
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