View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0458_low_2 (Length: 496)

Name: NF0458_low_2
Description: NF0458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0458_low_2
NF0458_low_2
[»] chr4 (22 HSPs)
chr4 (29-332)||(6738065-6738367)
chr4 (29-254)||(6541756-6541981)
chr4 (144-460)||(6748533-6748858)
chr4 (141-275)||(6503827-6503961)
chr4 (163-252)||(6811523-6811612)
chr4 (163-254)||(6792068-6792159)
chr4 (141-252)||(6502599-6502710)
chr4 (163-252)||(6593461-6593550)
chr4 (163-250)||(6832044-6832131)
chr4 (163-252)||(6627110-6627199)
chr4 (166-254)||(6522906-6522994)
chr4 (144-252)||(6550723-6550831)
chr4 (163-275)||(6646747-6646859)
chr4 (333-486)||(6811702-6811855)
chr4 (163-252)||(6769229-6769318)
chr4 (397-477)||(6503616-6503696)
chr4 (398-477)||(6626876-6626955)
chr4 (395-477)||(6502365-6502447)
chr4 (389-477)||(6792312-6792400)
chr4 (413-486)||(6832300-6832373)
chr4 (398-473)||(6647009-6647084)
chr4 (395-486)||(6665419-6665510)
[»] scaffold0729 (2 HSPs)
scaffold0729 (163-254)||(6470-6561)
scaffold0729 (389-477)||(6229-6317)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 332
Target Start/End: Original strand, 6738065 - 6738367
Alignment:
Q  29 acatataatggtctcttgtttctctattatacaggaacggaggtgaacatataacacaggtagttaaatgtgctactcttattgtaagcaagaaaagagc 128  Q
    ||||||||| |||||||||||||||||||||||||||| | ||| |||| |||||| | |||||||||||||||||||||||  ||||||||||||||||    
T  6738065 acatataatcgtctcttgtttctctattatacaggaacag-ggtaaacagataacaaatgtagttaaatgtgctactcttatgataagcaagaaaagagc 6738163  T
Q  129 ctcgttccatatagagagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgaca 228  Q
    ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  6738164 ctcattccatatggagagcatacattctcgtgcccaagatgtgattcaactattgaaacaatcaaaatcttctctcctgctagggatatgggggatgaca 6738263  T
Q  229 gggattggtaaatcaaccattgccaacgaaatttatactcagattgggaacttttttgaggacaaatgctacctagaatatgttaagggagcatttcata 328  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||    
T  6738264 gggattggtaaatcaaccattgccaacgccatttatactcggattgggaacttttttgaggacaaatgctgcctataatatgtcaagggagcatttcgta 6738363  T
Q  329 ctct 332  Q
    ||||    
T  6738364 ctct 6738367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 6541981 - 6541756
Alignment:
Q  29 acatataatggtctcttgtttctctattatacaggaacggaggtgaacatataacacaggtagttaaatgtgctactcttattgtaagcaagaaaagagc 128  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6541981 acatataattgtctcttgtttctctactatacaggaacagaggtgaacatataacacatgtagttaaatgtgctactcttattgtaagcaagaaaagagc 6541882  T
Q  129 ctcgttccatatagagagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgaca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  6541881 ctcgttccatatagagagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctcttttagtagggatatgggggatgaca 6541782  T
Q  229 gggattggtaaatcaaccattgccaa 254  Q
    |||||||| ||||||||||| |||||    
T  6541781 gggattggcaaatcaaccatcgccaa 6541756  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 144 - 460
Target Start/End: Original strand, 6748533 - 6748858
Alignment:
Q  144 gagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatca 243  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||| ||||||||||||||| ||||| |||||||||||    
T  6748533 gagcataaattctcgtgcccaagatgtgattcaactattaaaacaatcgaaatcccctctcctactcgggatatgggggatggcaggggttggtaaatca 6748632  T
Q  244 accattgccaacgaaatttatactcagattgggaacttttttgaggacaaatgctacctagaatatgttaagggagcat----------ttcatactcta 333  Q
     | ||||| || |  ||||||  ||| |||||   || ||||||||| | |||||  |||||||||||  ||||| |||          ||| |||||||    
T  6748633 gctattgctaaagccatttatgatcaaattggtccctattttgaggatacatgctttctagaatatgtccagggaacatcagatgaaaattc-tactcta 6748731  T
Q  334 gtttctttacaagagaatattcttttagatatcgacaaagcaagtaaaatagatatatctgcagttgaatcaggaaaagtgattttaaaagaaagacttc 433  Q
    |||||||||||||||||  ||||||| ||  |||||| ||||| |||||||||| ||||| || |  |||| ||| ||| ||||||||||||||||||||    
T  6748732 gtttctttacaagagaaacttctttttgaactcgacacagcaactaaaatagatgtatctacaatgcaatctggagaagagattttaaaagaaagacttc 6748831  T
Q  434 agcataaaagggtacttcttatacttg 460  Q
    | ||||||| ||||||| |||||||||    
T  6748832 aacataaaaaggtactttttatacttg 6748858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 6503961 - 6503827
Alignment:
Q  141 agagagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaa 240  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||    
T  6503961 agagagcatacattctcgtgcacaagatgtgattcaactattgaaacaatcaaaatctcctctcctgctggggatatgggggatgacagggattggtaaa 6503862  T
Q  241 tcaaccattgccaacgaaatttatactcagattgg 275  Q
    |||||||||||| | |  ||||||| |||||||||    
T  6503861 tcaaccattgccgaagccatttataatcagattgg 6503827  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 6811523 - 6811612
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 252  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6811523 caagatgtgattcaacaattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcagccattgcc 6811612  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 6792068 - 6792159
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 254  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6792068 caagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 6792159  T

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Target: chr4; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 6502710 - 6502599
Alignment:
Q  141 agagagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaa 240  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||| |||||||| |||||    
T  6502710 agagagcatacattctcatgcgcaagatgtgattcaactattgaaacaatcaagatctcctctcctgctagggatgtgggggatgtcagggattagtaaa 6502611  T
Q  241 tcaaccattgcc 252  Q
    ||||||||||||    
T  6502610 tcaaccattgcc 6502599  T

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Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 6593550 - 6593461
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 252  Q
    ||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  6593550 caagacgtgattcaactattgaaacaatcaaaaagtcctctcataatagggatatgggggatgacagggattggtaaatcaaccattgcc 6593461  T

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Target: chr4; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 6832044 - 6832131
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattg 250  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  6832044 caagatgtgattcaactattgaaacagtcaaaatctcctctcatactagggatatgggggatgccagggattggtaaatcaagcattg 6832131  T

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Target: chr4; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 6627199 - 6627110
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 252  Q
    |||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||  |||||||||||||||||||||||||    
T  6627199 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcc 6627110  T

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Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 6522994 - 6522906
Alignment:
Q  166 gatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 254  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||| ||||||||||||  |||||||||||||||||||||||||||    
T  6522994 gatgtgattcaactattgaaacaatcaaaatctcctctcgtaataggcatatgggggatggtagggattggtaaatcaaccattgccaa 6522906  T

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Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 6550831 - 6550723
Alignment:
Q  144 gagcatacactctcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatca 243  Q
    ||||||| | |||||||  |||||||||||||||||||||||||||||||||| |||||| ||  ||||||| ||||||||| |||||||||||||| ||    
T  6550831 gagcataaattctcgtgtgcaagatgtgattcaactattgaaacaatcaaaatctcctctacttatagggatttgggggatggcagggattggtaaaaca 6550732  T
Q  244 accattgcc 252  Q
    |||||||||    
T  6550731 accattgcc 6550723  T

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Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 6646747 - 6646859
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaacgaaattt 262  Q
    |||||||||||||| || ||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| | |  ||||    
T  6646747 caagatgtgattcacctgttgaaacaatcaagaagtcctctcctaatagggatatgggggatggcagggatcggtaaatcaaccattgccgaagccattt 6646846  T
Q  263 atactcagattgg 275  Q
    ||| |||||||||    
T  6646847 ataatcagattgg 6646859  T

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Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 6811702 - 6811855
Alignment:
Q  333 agtttctttacaagagaatattcttttagatatcgacaaagcaagtaaaatagatatatctgcagttgaatcaggaaaagtgattttaaaagaaagactt 432  Q
    |||||||||||||| |||  ||||||||||| |||||||||||| ||||| | | ||  || || ||||||  ||||||| |||||||||||||||| ||    
T  6811702 agtttctttacaagcgaaacttcttttagatgtcgacaaagcaactaaaacaaagattcctacaattgaattgggaaaagagattttaaaagaaagattt 6811801  T
Q  433 cagcataaaagggtacttcttatacttgatgatgttgataaattgcaacagcta 486  Q
    |  |||||||||||||||||| ||||||| |||||| |||||||| | ||||||    
T  6811802 cgacataaaagggtacttcttgtacttgacgatgttaataaattggagcagcta 6811855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 6769229 - 6769318
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 252  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||| | ||||| |||||||||||||||||||||||| | |||||||||    
T  6769229 caagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcc 6769318  T

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Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 6503696 - 6503616
Alignment:
Q  397 gttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattg 477  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |||||||  ||||||||||||||    
T  6503696 gttgaatcaggaagagttattttaaaagaaaggcttcaacataaaagggtacttcttctacttgacaatgttgataaattg 6503616  T

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Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 6626955 - 6626876
Alignment:
Q  398 ttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattg 477  Q
    |||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||| ||||||||    
T  6626955 ttgaatcagggaaagtgattttaaaagaaagactccgtcataaaagtgtacttcttatacttgacgatgttaataaattg 6626876  T

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Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 477
Target Start/End: Complemental strand, 6502447 - 6502365
Alignment:
Q  395 cagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattg 477  Q
    ||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||| ||||| |  ||||||| ||||||    
T  6502447 cagttgaatcaggaagaattattttaaaagaaagacttcaacataaaagggtacttcttctactttacaatgttgacaaattg 6502365  T

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Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 6792312 - 6792400
Alignment:
Q  389 tatctgcagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattg 477  Q
    ||||| || |||||||||||| || ||| |||||| |||| ||||| |||||||||||||||||| |||||||  ||||||||||||||    
T  6792312 tatctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttgacaatgttgataaattg 6792400  T

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Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 486
Target Start/End: Original strand, 6832300 - 6832373
Alignment:
Q  413 tgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattgcaacagcta 486  Q
    |||||| |||||||| |||||  ||||||||||||||||||||||||||  |||||||||||||| | ||||||    
T  6832300 tgatttcaaaagaaaaacttcgacataaaagggtacttcttatacttgacaatgttgataaattggatcagcta 6832373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 473
Target Start/End: Original strand, 6647009 - 6647084
Alignment:
Q  398 ttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataa 473  Q
    ||||||||||||||   ||||||||||||| ||||||  ||||||||||||||||| |||||||  ||||||||||    
T  6647009 ttgaatcaggaaaaaatattttaaaagaaaaacttcataataaaagggtacttcttgtacttgacaatgttgataa 6647084  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 6665419 - 6665510
Alignment:
Q  395 cagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattgcaacagcta 486  Q
    ||||| |||||||||  || ||||||||||| || ||||| |||||||||||||||||| |||||||  ||||| ||| |||| | ||||||    
T  6665419 cagttaaatcaggaagcgttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagcta 6665510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 6561 - 6470
Alignment:
Q  163 caagatgtgattcaactattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 254  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6561 caagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 6470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 6317 - 6229
Alignment:
Q  389 tatctgcagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgttgataaattg 477  Q
    ||||| || |||||||||||| || ||| |||||| |||| ||||| |||||||||||||||||| |||||||  ||||||||||||||    
T  6317 tatctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttgacaatgttgataaattg 6229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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