View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0458_low_4 (Length: 362)

Name: NF0458_low_4
Description: NF0458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0458_low_4
NF0458_low_4
[»] chr7 (29 HSPs)
chr7 (1-329)||(16963449-16963770)
chr7 (192-362)||(26041499-26041670)
chr7 (225-327)||(30284155-30284257)
chr7 (225-327)||(24846451-24846553)
chr7 (188-327)||(472587-472726)
chr7 (225-327)||(472805-472907)
chr7 (227-327)||(24485774-24485874)
chr7 (236-327)||(4133076-4133167)
chr7 (244-327)||(6000524-6000607)
chr7 (200-327)||(30283918-30284045)
chr7 (244-327)||(6000686-6000769)
chr7 (244-327)||(8462892-8462975)
chr7 (236-327)||(43392335-43392426)
chr7 (225-327)||(16962870-16962972)
chr7 (199-327)||(26041746-26041874)
chr7 (244-327)||(24846289-24846372)
chr7 (244-327)||(32389681-32389764)
chr7 (225-327)||(24485595-24485697)
chr7 (225-327)||(8463054-8463156)
chr7 (252-329)||(4132888-4132965)
chr7 (236-327)||(32871646-32871738)
chr7 (251-327)||(37691747-37691823)
chr7 (244-327)||(18417455-18417538)
chr7 (278-327)||(37691934-37691983)
chr7 (228-275)||(17052366-17052413)
chr7 (254-310)||(32389602-32389658)
chr7 (233-274)||(21709192-21709233)
chr7 (226-274)||(10990581-10990629)
chr7 (272-312)||(18417530-18417570)
[»] chr8 (17 HSPs)
chr8 (225-362)||(10134812-10134949)
chr8 (225-362)||(40832310-40832447)
chr8 (225-327)||(10134634-10134736)
chr8 (227-327)||(21015171-21015271)
chr8 (225-327)||(40832162-40832264)
chr8 (225-327)||(21014958-21015060)
chr8 (244-327)||(12654940-12655023)
chr8 (236-327)||(31933310-31933401)
chr8 (244-327)||(12654746-12654829)
chr8 (244-327)||(13557379-13557461)
chr8 (244-327)||(36194672-36194755)
chr8 (244-325)||(36194868-36194949)
chr8 (245-327)||(18847412-18847494)
chr8 (244-327)||(31933510-31933593)
chr8 (244-327)||(13557185-13557268)
chr8 (192-265)||(16906456-16906530)
chr8 (248-323)||(18847577-18847652)
[»] chr3 (26 HSPs)
chr3 (188-327)||(26247109-26247249)
chr3 (225-327)||(43465051-43465153)
chr3 (200-327)||(26246868-26246996)
chr3 (203-362)||(24244468-24244628)
chr3 (200-327)||(13301886-13302014)
chr3 (200-327)||(13312542-13312670)
chr3 (227-327)||(46453113-46453213)
chr3 (225-327)||(6276285-6276387)
chr3 (199-327)||(43464811-43464939)
chr3 (244-327)||(52857021-52857104)
chr3 (225-327)||(24244703-24244805)
chr3 (199-327)||(4953123-4953252)
chr3 (200-327)||(52857215-52857343)
chr3 (244-327)||(11047217-11047300)
chr3 (227-327)||(4953363-4953463)
chr3 (243-327)||(46452919-46453003)
chr3 (248-327)||(26988854-26988933)
chr3 (244-327)||(49220321-49220404)
chr3 (244-327)||(31071153-31071236)
chr3 (248-327)||(49220163-49220242)
chr3 (225-327)||(6276084-6276186)
chr3 (245-327)||(28253489-28253571)
chr3 (244-329)||(11047013-11047097)
chr3 (244-323)||(31070994-31071072)
chr3 (245-327)||(28253679-28253761)
chr3 (244-327)||(18733987-18734069)
[»] scaffold0220 (2 HSPs)
scaffold0220 (200-362)||(26167-26330)
scaffold0220 (198-327)||(25961-26091)
[»] chr4 (29 HSPs)
chr4 (225-327)||(44304008-44304110)
chr4 (225-327)||(14251435-14251537)
chr4 (225-327)||(35016716-35016818)
chr4 (192-327)||(49905936-49906072)
chr4 (227-327)||(51399244-51399344)
chr4 (225-327)||(44304221-44304323)
chr4 (199-327)||(14251195-14251324)
chr4 (226-327)||(49905755-49905856)
chr4 (200-327)||(35016928-35017055)
chr4 (225-327)||(51399455-51399557)
chr4 (244-327)||(36215694-36215777)
chr4 (244-327)||(55620238-55620321)
chr4 (244-327)||(55627542-55627625)
chr4 (244-327)||(8607821-8607904)
chr4 (236-327)||(17254685-17254776)
chr4 (245-327)||(1113256-1113338)
chr4 (236-327)||(1113416-1113507)
chr4 (236-327)||(29430144-29430235)
chr4 (246-329)||(17254490-17254573)
chr4 (244-327)||(24039295-24039378)
chr4 (236-327)||(24039488-24039579)
chr4 (244-327)||(36215856-36215939)
chr4 (236-327)||(51024484-51024575)
chr4 (251-327)||(43099376-43099451)
chr4 (244-327)||(48018655-48018738)
chr4 (244-327)||(55561064-55561147)
chr4 (260-327)||(55561223-55561290)
chr4 (244-282)||(42872334-42872372)
chr4 (242-274)||(33075201-33075233)
[»] chr2 (17 HSPs)
chr2 (225-362)||(36065418-36065555)
chr2 (227-362)||(10373219-10373354)
chr2 (225-327)||(16203682-16203784)
chr2 (225-327)||(25946065-25946167)
chr2 (199-327)||(16581337-16581465)
chr2 (227-327)||(38978854-38978954)
chr2 (244-327)||(12701972-12702055)
chr2 (200-327)||(25945826-25945954)
chr2 (244-324)||(12702168-12702248)
chr2 (252-327)||(36065267-36065342)
chr2 (244-324)||(2217849-2217929)
chr2 (227-327)||(16203472-16203572)
chr2 (244-327)||(12261063-12261146)
chr2 (225-292)||(16581559-16581626)
chr2 (244-327)||(21304373-21304455)
chr2 (260-314)||(38978713-38978767)
chr2 (280-325)||(45115029-45115074)
[»] chr5 (17 HSPs)
chr5 (225-327)||(1983488-1983590)
chr5 (200-362)||(17115523-17115686)
chr5 (199-327)||(18508523-18508652)
chr5 (227-327)||(35463802-35463902)
chr5 (227-327)||(14662601-14662701)
chr5 (227-327)||(35463590-35463690)
chr5 (227-327)||(18508761-18508861)
chr5 (225-327)||(14662389-14662490)
chr5 (255-327)||(8417615-8417687)
chr5 (251-327)||(9990007-9990083)
chr5 (236-327)||(18968546-18968637)
chr5 (271-327)||(9990162-9990218)
chr5 (272-327)||(8417798-8417853)
chr5 (252-327)||(36207415-36207490)
chr5 (244-284)||(24503227-24503267)
chr5 (244-284)||(24509069-24509109)
chr5 (244-284)||(34898984-34899024)
[»] chr1 (30 HSPs)
chr1 (200-362)||(10719356-10719519)
chr1 (199-327)||(10719563-10719692)
chr1 (191-327)||(45823026-45823163)
chr1 (244-327)||(39277821-39277904)
chr1 (236-327)||(28990537-28990628)
chr1 (244-327)||(39277627-39277710)
chr1 (199-327)||(35814326-35814455)
chr1 (244-327)||(10394175-10394258)
chr1 (233-327)||(35814122-35814216)
chr1 (244-327)||(7714217-7714300)
chr1 (236-327)||(10394369-10394460)
chr1 (244-327)||(28990344-28990427)
chr1 (244-327)||(47422100-47422183)
chr1 (244-324)||(47421936-47422016)
chr1 (244-327)||(45822832-45822915)
chr1 (236-327)||(52285091-52285181)
chr1 (244-327)||(52285291-52285374)
chr1 (244-327)||(15158368-15158451)
chr1 (244-327)||(19920550-19920633)
chr1 (244-327)||(27334390-27334473)
chr1 (244-327)||(30049960-30050043)
chr1 (249-327)||(36076935-36077013)
chr1 (257-327)||(7714411-7714480)
chr1 (244-327)||(16959077-16959160)
chr1 (244-327)||(30050154-30050237)
chr1 (244-327)||(49186045-49186128)
chr1 (244-327)||(16958887-16958966)
chr1 (276-327)||(5682963-5683014)
chr1 (272-310)||(30049928-30049966)
chr1 (278-326)||(15158530-15158578)
[»] chr6 (5 HSPs)
chr6 (200-327)||(959009-959137)
chr6 (198-327)||(959247-959377)
chr6 (244-327)||(1211439-1211522)
chr6 (244-327)||(1211634-1211717)
chr6 (233-265)||(20489433-20489465)
[»] scaffold0009 (1 HSPs)
scaffold0009 (244-326)||(233672-233754)
[»] scaffold0130 (1 HSPs)
scaffold0130 (252-327)||(25491-25567)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 16963770 - 16963449
Alignment:
Q  1 tctgcagccacctgaacaaagtacagctacatcataaaagttctgagctactacaagcaattcatgaaactgtaaattttccaggctgtttgagaggtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16963770 tctgcagccacctgaacaaagtacagctacatcataaaagttctgagctactacaagcaattcatgaaactgtaaattttccaggctgtttgagaggtat 16963671  T
Q  101 attgatttgtcttgtatgatatagtcctaaatatggtaatctagacacaatatacattggaaactactactttgtttggtacatgtaaattaaaaatatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16963670 attgatttgtcttgtatgatatagtcctaaatatggtaatctagacgcaatatacattggaaactactactttgtttggtacatgtaaattaaaaatatg 16963571  T
Q  201 gcttaaacgttctcttgatcccttagtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtat 300  Q
    ||       || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16963570 gc-------ttgtcttggtcccttagtatttatttagtattgctttgttcccataagtaataaaatgtccattttggtcccttaactttattgaaagtat 16963478  T
Q  301 cggtttggtcctttctgttaatttaatgc 329  Q
    |||||||||| ||||||||||||||||||    
T  16963477 cggtttggtcttttctgttaatttaatgc 16963449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 192 - 362
Target Start/End: Original strand, 26041499 - 26041670
Alignment:
Q  192 aaaaatatggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaacttta 290  Q
    ||||||| |||||||| | ||| ||| ||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26041499 aaaaataaggcttaaatgctcttttggtcccttaagtatttattcagtatcgctttggtcccataagtaataaaaggtccgttttggtcccttaacttta 26041598  T
Q  291 ttgaaagtatcggtttggtcctttctgttaatttaatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||||||||||||||||||||||||||||||||||||| |       ||||||||||||| | ||||||||||    
T  26041599 ttgaaagtatcggtttggtcctttctgttaatttaattcaaaaaaacgttaaattttgatcccttatcttat 26041670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 30284257 - 30284155
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30284257 agtatttatttagtatcgctttggtctcataagtaataaaatgtccgtttaggtcccttaactttattgaaagtatcggtttggtcatttctgttaattt 30284158  T
Q  325 aat 327  Q
    |||    
T  30284157 aat 30284155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 24846553 - 24846451
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| |||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  24846553 agtatttatttagtatcgctttggttccataaataataaaaggtccgttttagtcccttaactttattgaaagtattggtttggtcctttctgttaattt 24846454  T
Q  325 aat 327  Q
    |||    
T  24846453 aat 24846451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 327
Target Start/End: Original strand, 472587 - 472726
Alignment:
Q  188 aattaaaaatatggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaac 286  Q
    |||| |||||||| |||||| | ||| ||| ||||||| ||||||||||||||| | ||||||| |||||||||||||| || ||||| |||||||||||    
T  472587 aatttaaaatatg-cttaaatgctcttttggtcccttaagtatttatttagtatcgttttggtctcataagtaataaaaggtgcgtttaggtcccttaac 472685  T
Q  287 tttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  472686 tttattgaaagtatcagtttggtcctttctgttaatttaat 472726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 472907 - 472805
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| |||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  472907 agtatttatttggtatcgctttggtcccataagtaatgaactgtccgtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaattt 472808  T
Q  325 aat 327  Q
    |||    
T  472807 aat 472805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 24485874 - 24485774
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| | |||||||||||||||||||||| ||||||||  |||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  24485874 tatttatttggtatcgttttggtcccataagtaataaaaagtccgtttaagtcccttaactttatttaaagtgtcggtttggtcctttctattaatttaa 24485775  T
Q  327 t 327  Q
    |    
T  24485774 t 24485774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 4133167 - 4133076
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  4133167 agtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaactttatttaaagtgtcagtttggtcctttctgttaatttaat 4133076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 6000524 - 6000607
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  6000524 tttggtcccataagtaataaaaagtccatttaggtcccttaactttatttaaagtatcagtttggtcctttctgttaatttaat 6000607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 30283918 - 30284045
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| |||||||||| |||| | ||||||| |||||||||||||| |||||||| | ||||||||||| ||| |||||    
T  30283918 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgttttggtctcataagtaataaaaggtccgtttag-tcccttaacttcatttaaagt 30284016  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||| ||||||||||||    
T  30284017 atcggtttgatcctttttgttaatttaat 30284045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 6000769 - 6000686
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| ||| |||||||||| ||||||||||    
T  6000769 tttggtcctataagtaataaaaagtccgtttaggtcccttaactttatttaaagtatccgttaggtcctttctcttaatttaat 6000686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 8462892 - 8462975
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||||||| |||||| |||||||||||||||||||    
T  8462892 tttggtcccataaataataaaatgtctgtttaggtcctttaactttatttaaagtattggtttgatcctttctgttaatttaat 8462975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 43392335 - 43392426
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||| || ||||| |||||||| ||||||||||||||||| ||| |||||||||||||| || ||||||||||||    
T  43392335 agtattggtttggtcccataaatattaaaaggtccgtttaggtcccttaactttatttaaaatatcggtttggtcccttttgttaatttaat 43392426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 16962870 - 16962972
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| ||||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||  |||| | |||| |||||||||    
T  16962870 agtatttatttggtatcgctttggtctcataagtaataaaaggtccgtttaggtccattaactttatttaaagtatcattttgattctttatgttaattt 16962969  T
Q  325 aat 327  Q
    |||    
T  16962970 aat 16962972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 26041874 - 26041746
Alignment:
Q  199 tggcttaaacgttctcttgatcccttag-tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| |||||||  ||||||||| |||| |||||||||| ||||||||||||| ||  |||| ||||||||||||||||| ||||    
T  26041874 tggcttaaatgctcttttggtcccttaaatatttatttggtatcgctttggtcctataagtaataaaaggtttgtttaggtcccttaactttatttaaag 26041775  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||| | |||| ||||||||||||    
T  26041774 tatcggtttgat-ctttatgttaatttaat 26041746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 24846289 - 24846372
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| || ||| ||||||||||||    
T  24846289 tttggtctcataagtaataaaaggtccgtttaggtcccttaactttatttaaagtatcagtttgatcatttatgttaatttaat 24846372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 32389764 - 32389681
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||| |||||||| ||||| |||||| ||||||||||||    
T  32389764 tttggtccaataagtaataaaatgtctgtttaagtcccttaactttatttaaagtatcagtttgatcctttttgttaatttaat 32389681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 24485595 - 24485697
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||  ||| | ||||||||  |||||||||||||||||| ||| |||||||||||||||| ||||||  |||||||||| |||| |||||||    
T  24485595 agtatttatttgatatcgttttggtcctttaagtaataaaatgtccgatttagtcccttaactttatttaaagtaatggtttggtcccttctattaattt 24485694  T
Q  325 aat 327  Q
    |||    
T  24485695 aat 24485697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 8463156 - 8463054
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||  ||| |||||| |||| ||| ||||||||  ||||||| | ||||||||||||||| |||||| | ||||||||  ||||||||||||    
T  8463156 agtatttatttgatatcgctttgatcccttaaataataaaaattccgtttagatcccttaactttatttaaagtaacagtttggtctcttctgttaattt 8463057  T
Q  325 aat 327  Q
    |||    
T  8463056 aat 8463054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 4132888 - 4132965
Alignment:
Q  252 cataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaatgc 329  Q
    |||||||||||||| ||   |||||||||||||||||||||  ||||||||||||| ||| || ||||||||||||||    
T  4132888 cataagtaataaaaggtttattttggtcccttaactttatttcaagtatcggtttgatcccttatgttaatttaatgc 4132965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 32871646 - 32871738
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatg-tccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||| ||||||||   || |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||    
T  32871646 agtattggtttggtcccataaataataaaaaaatctgtttaggtcccttaactttatttaaagtatgagtttggttctttatgttaatttaat 32871738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 37691747 - 37691823
Alignment:
Q  251 ccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||| ||||| ||  ||||||||| |||||| ||||||||  ||||||| ||||||||||||||||    
T  37691747 ccataagtaataaaaagtccgattaagtcccttaattttatttaaagtatcactttggtcttttctgttaatttaat 37691823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 18417538 - 18417455
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||| ||| |||| |||||||| |||| ||| ||||||||||||||||| ||||||||  ||||||||||||  ||||||||||    
T  18417538 tttgatcctataaataataaaaggtccatttaggtcccttaactttatttaaagtatcaatttggtcctttccattaatttaat 18417455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 37691983 - 37691934
Alignment:
Q  278 tcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  37691983 tcccttaactttatttaaagtatcagtttggtcctttcagttaatttaat 37691934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 17052366 - 17052413
Alignment:
Q  228 atttatttagtattgctttggtcccataagtaataaaatgtccgtttt 275  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  17052366 atttatttagtatcgctttggtcccataagtaataaaaggtcggtttt 17052413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 32389602 - 32389658
Alignment:
Q  254 taagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtc 310  Q
    |||||||||||| || |||||  |||||||||||||||| |||||| ||||||||||    
T  32389602 taagtaataaaaggttcgtttaagtcccttaactttatttaaagtaacggtttggtc 32389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 21709192 - 21709233
Alignment:
Q  233 tttagtattgctttggtcccataagtaataaaatgtccgttt 274  Q
    |||||||| ||||||||||||||| |||||||| ||||||||    
T  21709192 tttagtatcgctttggtcccataattaataaaaagtccgttt 21709233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 10990629 - 10990581
Alignment:
Q  226 gtatttatttagtattgctttggtcccataagtaataaaatgtccgttt 274  Q
    |||||| |||||||| |||||| ||||||||||||||||| ||| ||||    
T  10990629 gtatttttttagtatcgctttgatcccataagtaataaaaagtctgttt 10990581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 18417570 - 18417530
Alignment:
Q  272 ttttggtcccttaactttattgaaagtatcggtttggtcct 312  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  18417570 ttttggtcccttaactttatttcaagtatcggtttgatcct 18417530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 10134949 - 10134812
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10134949 agtatttatttagtatcgctttggtcccataagtaataaaaggtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 10134850  T
Q  325 aatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||| |       ||||||||||||| | ||||||||||    
T  10134849 aattcaaaaaaacgttaaattttgatcccttatcttat 10134812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 40832447 - 40832310
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  40832447 agtatttatttagtatcgctttggtcccataagtaataaaagatccgttttgtccccttaactttattaaaagtatcggtttggtcctttctgttaattt 40832348  T
Q  325 aatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||| |       ||||||||||||| | ||||||||||    
T  40832347 aattcaaaaaaacgttaaattttgatcccttatcttat 40832310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 10134634 - 10134736
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  10134634 agtatttatttggtatcgctttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaattt 10134733  T
Q  325 aat 327  Q
    |||    
T  10134734 aat 10134736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 21015271 - 21015171
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  21015271 tatttatttggtatcgctttggtcccataagtaataaaaagtctgtttgggtcccttaactttatttaaagtatcggtttggtcctttcttttaatttaa 21015172  T
Q  327 t 327  Q
    |    
T  21015171 t 21015171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 40832162 - 40832264
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| | |||| ||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||| |||||| |||||||||    
T  40832162 agtatttatttggtatcgttttgatcccataagtaataaaaggtccgtttaggtcccttaattttatttaaagtatcggtttgatcctttatgttaattt 40832261  T
Q  325 aat 327  Q
    |||    
T  40832262 aat 40832264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 21014958 - 21015060
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| | ||||||||  |||||||||||| ||  |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  21014958 agtatttatttggtatcgttttggtcctttaagtaataaaaggtttgttttggtcccttaactttatttaaagtaacggtttggtcccttctgttaattt 21015057  T
Q  325 aat 327  Q
    |||    
T  21015058 aat 21015060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 12655023 - 12654940
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  12655023 tttggtcccataagtaataaaagttccgtttaggtcccttaactttatttaaagtatctgtttggtcctttatgtcaatttaat 12654940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 31933310 - 31933401
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||||||||||||||||||||| |||  ||| | ||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  31933310 agtattggtttggtcccataagtaataaaaggtctatttagatcccttaactttatttaaagtatcactttggtcctttctgttaatttaat 31933401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 12654746 - 12654829
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||| |||||||| |||| ||| | | ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  12654746 tttggtcccataaataataaaaggtccatttagtttccttaactttatttaaagtatcagtttggtcctttctgttaatttaat 12654829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 13557461 - 13557379
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||| ||| ||||||||||||    
T  13557461 tttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtatc-gtttggtcttttatgttaatttaat 13557379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 36194672 - 36194755
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| ||| |||| | ||||||||||||||| |||||||| ||||| |||||||| ||||||||||    
T  36194672 tttggtcccataagtaataaaaagtctgtttagatcccttaactttatttaaagtatcagtttgatcctttctattaatttaat 36194755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 36194949 - 36194868
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattta 325  Q
    ||||||||||||| |||| |||  ||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  36194949 tttggtcccataaataatcaaaaatccgtttaggtcctttaactttatttaaagtatcagtttggtcctttctgttaattta 36194868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 18847412 - 18847494
Alignment:
Q  245 ttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||| |||||||||||||| ||  ||||  |||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  18847412 ttggtctcataagtaataaaaggtttgtttatgtcccttaactttatttaaagtatcggtttggtcccttatgttaatttaat 18847494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 31933593 - 31933510
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||| ||| | |||  |||||||||| ||||||||  ||||||||||||| ||||||||||    
T  31933593 tttggtcccataagtaataaaaagtccatttagatccgctaactttatttaaagtatcaatttggtcctttctcttaatttaat 31933510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 13557185 - 13557268
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcc-tttctgttaatttaat 327  Q
    |||||||||||||||||||||| || ||||| |||||| |||||||||| ||||||||||| || ||| ||| ||||||||||||    
T  13557185 tttggtcccataagtaataaaaggttcgtttaggtcccataactttatt-aaagtatcggtctgatccttttttgttaatttaat 13557268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 16906530 - 16906456
Alignment:
Q  192 aaaaatatggcttaaacgttctcttgatccctt-agtatttatttagtattgctttggtcccataagtaataaaa 265  Q
    ||||||| |||||||| ||||||||| |||||| ||||||||||| |||| ||||||||||| ||| ||| ||||    
T  16906530 aaaaataaggcttaaatgttctcttggtcccttgagtatttatttggtatcgctttggtcccttaattaaaaaaa 16906456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 18847652 - 18847577
Alignment:
Q  248 gtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatt 323  Q
    |||||||||||||||||| |||  |||  ||||||||||||| || || ||| ||||||||||| || ||||||||    
T  18847652 gtcccataagtaataaaaagtctatttaagtcccttaactttgtttaaggtaacggtttggtcccttatgttaatt 18847577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 26247249 - 26247109
Alignment:
Q  188 aattaaaaatatggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaac 286  Q
    |||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  26247249 aattaaaactatggtttaaatgttcttttggtcccttaagtatttatttagtatcgctttggtcccataagtaataaaaggtccgttttggtctcttaac 26247150  T
Q  287 tttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  26247149 tttattgaaagtatcagtttggtcctttctgttaatttaat 26247109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 43465153 - 43465051
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  43465153 agtatttatttagtatcgttttggtcccataagtaataaaatgtccgttttggtccattaactttattgaaattatcggtttggtcctttctgttaattt 43465054  T
Q  325 aat 327  Q
    |||    
T  43465053 aat 43465051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 26246868 - 26246996
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| |||||||||| |||| | ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  26246868 ggcttaaatgatcttttggtcccttaagtatttatttggtatcgttttggtcccgtaagtaataaaatgtccgtttaggtcccttaactttatttaaagt 26246967  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||||||||||||||||    
T  26246968 atcggtttgatcctttctgttaatttaat 26246996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 203 - 362
Target Start/End: Original strand, 24244468 - 24244628
Alignment:
Q  203 ttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatc 301  Q
    ||||| ||||| ||| ||||||| ||||||||||||||| | |||| |||||||||||||||||  || |||||||||||||||||||||||||||||||    
T  24244468 ttaaatgttcttttggtcccttaagtatttatttagtatcgttttgatcccataagtaataaaagatctgttttggtcccttaactttattgaaagtatc 24244567  T
Q  302 ggtttggtcctttctgttaatttaatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||||||||||||| | |||||||||| |       ||||||||||||  ||||||||||||    
T  24244568 ggtttggtcctttatattaatttaattcaaaaaaacgttaaattttggtctcttatcttat 24244628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 13302014 - 13301886
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| |||||||||| |||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||||| |||||    
T  13302014 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccgtaagtaataaaagatccgtttaggtcccttaactttatttaaagt 13301915  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||||||||||||||||    
T  13301914 atcggtttgatcctttctgttaatttaat 13301886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 13312670 - 13312542
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| |||||||||| |||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||||| |||||    
T  13312670 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccgtaagtaataaaagatccgtttaggtcccttaactttatttaaagt 13312571  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||||||||||||||||    
T  13312570 atcggtttgatcctttctgttaatttaat 13312542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 46453213 - 46453113
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||    
T  46453213 tatttatttggtattgttttggtctcataagtaataaaaagtccgtttaggtcccttaactttatttaaagtatcggtttagtcctttatgttaatttaa 46453114  T
Q  327 t 327  Q
    |    
T  46453113 t 46453113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 6276387 - 6276285
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| | ||| |||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  6276387 agtatttatttagtatcgatttagtcccacaattaataaaatgtctgttttggtcccttaactttattgaaagtatcggtttgatcatttctgttgattt 6276288  T
Q  325 aat 327  Q
    |||    
T  6276287 aat 6276285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 43464811 - 43464939
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| ||||||| |||||||||| |||| |||||||||||||||||||||||| ||||| || |||||||||||| |||| ||||    
T  43464811 tggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagtaataaaaggtccggttaggtcccttaactatatttaaag 43464910  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    |||||| ||| |||||||||||||||||||    
T  43464911 tatcgg-ttgatcctttctgttaatttaat 43464939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 52857021 - 52857104
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52857021 tttggtcccataagtaataaaaggtccgtttagataccttaactttatttaaagtatcggtttggtcctttctgttaatttaat 52857104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 24244805 - 24244703
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| |||||| | ||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||| || |||||||||||||    
T  24244805 agtatttatttggtatcgctttgataccataagtaataaaaggtccgtttagatcccttaactttatttaaagtatcggtttgatcatttctgttaattt 24244706  T
Q  325 aat 327  Q
    |||    
T  24244705 aat 24244703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 4953123 - 4953252
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| ||||||| | |||||||| |||| ||||||||||| |||||||||||| ||||  |||||||||||||||||||| ||||    
T  4953123 tggcttaaatgctcttttggtcccttaaggatttatttggtatcgctttggtcccttaagtaataaaaggtccaatttggtcccttaactttatttaaag 4953222  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    ||  |||||||||| |||||||||||||||    
T  4953223 taatggtttggtcccttctgttaatttaat 4953252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 52857343 - 52857215
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| |||||||||| |||| ||||||||||| ||| ||| |||| || ||||| ||||||||||||||||| |||||    
T  52857343 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaaataaaaaaaagttcgtttaggtcccttaactttatttaaagt 52857244  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    | ||||||||||| |||||||||||||||    
T  52857243 aacggtttggtcccttctgttaatttaat 52857215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 11047300 - 11047217
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||  |||||||| ||||||||||||||||    
T  11047300 tttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaagtattagtttggtcatttctgttaatttaat 11047217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 4953463 - 4953363
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| | |||||||||||||||||||||| ||| ||||  |||||||||||||||| ||||| |||||||||||||||| ||||| ||||    
T  4953463 tatttatttggtatcgttttggtcccataagtaataaaaagtctgtttaagtcccttaactttatttaaagtgtcggtttggtcctttccgttaacttaa 4953364  T
Q  327 t 327  Q
    |    
T  4953363 t 4953363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 46452919 - 46453003
Alignment:
Q  243 ctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||| | ||||||||| |||||||||||||||    
T  46452919 ctttggtcccttaagtaataaaaggtccgttttgatcccttaactttatttaaagtaacagtttggtcccttctgttaatttaat 46453003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 26988854 - 26988933
Alignment:
Q  248 gtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||| ||| |||||||||||    
T  26988854 gtcccataagtaataaaatgtccttttaggtcccttaactttatttaaagtatgggtttggtcccttcagttaatttaat 26988933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 49220404 - 49220321
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||| |||||||| ||| |||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||    
T  49220404 tttggtcccataaataataaaaagtctgtttaggtcccttaactttatttaaagtatcagcttggtcctttctgttaatttaat 49220321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 31071236 - 31071153
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||| |||||||| |||||||| ||| |||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  31071236 tttgatcccataaataataaaaggtctgtttaggtcccttaactttatttaaagtatcagtttggtcatttctgttaatttaat 31071153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 49220163 - 49220242
Alignment:
Q  248 gtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  49220163 gtcccataaataataaaaagtccgtttaggtcctttaactttatttaaattatcggtttggtgctttctgttaatttaat 49220242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 6276084 - 6276186
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| |||||| ||| ||||||||||||| |||||||| | ||||  ||||||||| |||||||| ||||| ||||||| ||||||||    
T  6276084 agtatttatttggtatcgctttgatccaataagtaataaaaggtccgtttagatcccaaaactttatttaaagtatcagtttgatcctttcggttaattt 6276183  T
Q  325 aat 327  Q
    |||    
T  6276184 aat 6276186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 28253489 - 28253571
Alignment:
Q  245 ttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  28253489 ttggtcccaaaagtaataaaaagttcgtttaagtcccttaactttatttcaagtatcggtttggtcccttctgttaatttaat 28253571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 11047013 - 11047097
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaatgc 329  Q
    |||||||||||||| ||||||| |||| ||| ||||  |||||||||||  ||||||||||||||||| |||||||||||||||||    
T  11047013 tttggtcccataagaaataaaaggtccctttaggtct-ttaactttatttcaagtatcggtttggtcccttctgttaatttaatgc 11047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 31070994 - 31071072
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatt 323  Q
    ||||||||||||||||||||||  |||||||  ||||||||||||||||  ||||||| |||||||||||| ||||||||    
T  31070994 tttggtcccataagtaataaaagatccgtttaagtcccttaactttatt-taagtatcagtttggtcctttttgttaatt 31071072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 28253761 - 28253679
Alignment:
Q  245 ttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||| |||||||| ||| | ||  |||||||||||||||| |||||||| ||||| || ||||||||||||||||    
T  28253761 ttggtcccataaataataaaaggtctgattaagtcccttaactttatttaaagtatcagtttgatcatttctgttaatttaat 28253679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 18733987 - 18734069
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||| || ||||| ||| ||||  |||||||||||||||| |||||||| |||| || |||||||||||||||||    
T  18733987 tttggtcccataa-tagtaaaaagtctgtttaagtcccttaactttatttaaagtatcagtttcgttctttctgttaatttaat 18734069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 26330 - 26167
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26330 ggcttaaatgatcttttggtcccttaagtatttatttagtatcgttttggtcccataagtaataaaaggtccgttttggtcccttaactttattgaaagt 26231  T
Q  299 atcggtttggtcctttctgttaatttaatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||||||||||||||||||||||||||||| |       ||||||||||||| || |||||||||    
T  26230 atcggtttggtcctttctgttaatttaattcaaaaaaacgttaaattttgatcttttatcttat 26167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 25961 - 26091
Alignment:
Q  198 atggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaa 296  Q
    |||||||||| | ||| ||| ||||||| |||||||||| |||| |||||||||||||||||||||||| ||  ||||  |||||||||||||||| |||    
T  25961 atggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagtaataaaaagtttgtttaagtcccttaactttatttaaa 26060  T
Q  297 gtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||| |||||||||||||||||||    
T  26061 gtatcggtttgatcctttctgttaatttaat 26091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 44304008 - 44304110
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44304008 agtatttatttagtatcgctttggtcccataagtaataaaaggtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 44304107  T
Q  325 aat 327  Q
    |||    
T  44304108 aat 44304110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 14251537 - 14251435
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  14251537 agtatttatttagtatcgctttggtcccataagtaataaaaggtccgtattggtcctttaactttattgaaagtatcagtttggtcctttctgttaattt 14251438  T
Q  325 aat 327  Q
    |||    
T  14251437 aat 14251435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 35016716 - 35016818
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||| ||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35016716 agtatttacttagtatcgctttgaccccataagtaataaaaagtccgttttggtcccttaactttattgaaagtatcggtttggtcctttcggttaattt 35016815  T
Q  325 aat 327  Q
    |||    
T  35016816 aat 35016818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 49906072 - 49905936
Alignment:
Q  192 aaaaatatggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaacttta 290  Q
    ||||| || ||||||| | ||| ||| ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  49906072 aaaaaaatagcttaaatgctcttttggtcccttaagtatttatttagtatcgctttcgtcccataagtaataaaatgtccgttttgaccccttaacttta 49905973  T
Q  291 ttgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    || ||| |||||||||| |||||||||||||||||||    
T  49905972 ttaaaactatcggtttgatcctttctgttaatttaat 49905936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 51399244 - 51399344
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51399244 tatttatttggtatcgctttggtcccataagtaataaaaagtctgtttaggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaa 51399343  T
Q  327 t 327  Q
    |    
T  51399344 t 51399344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 44304323 - 44304221
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  44304323 agtatttatttggtatcgctttggtgccataagtaataaaaggtccgtttaggtcccttaactttatttaaagtatcggtttgatcctttatgttaattt 44304224  T
Q  325 aat 327  Q
    |||    
T  44304223 aat 44304221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 14251195 - 14251324
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| ||||||| |||||||||| |||| ||||||||||  |||||||||||| |||||||| ||||||||||||||||| ||||    
T  14251195 tggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcctctaagtaataaaaggtccgtttaggtcccttaactttatttaaag 14251294  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||| |||||||| ||||||||||    
T  14251295 tatcggtttgatcctttctattaatttaat 14251324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 49905755 - 49905856
Alignment:
Q  226 gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattta 325  Q
    |||||||||| |||| ||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  49905755 gtatttatttggtatcgctttggtctcataagtaataaaaggtccgtttaggtcccttaactttatttaaagtatcggtttgatcatttctgttaattta 49905854  T
Q  326 at 327  Q
    ||    
T  49905855 at 49905856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 35017055 - 35016928
Alignment:
Q  200 ggcttaaacgttctcttgatcccttagtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagta 299  Q
    |||||||| ||||| ||| ||| | ||||||||||| |||||||||||||||||||| |||| ||| |||| ||| |||| |||||||||||| ||||||    
T  35017055 ggcttaaatgttcttttggtccttaagtatttatttggtattgctttggtcccataaataattaaaggtccatttaggtctcttaactttatttaaagta 35016956  T
Q  300 tcggtttggtcctttctgttaatttaat 327  Q
    || ||||| |||||||||||||||||||    
T  35016955 tcagtttgatcctttctgttaatttaat 35016928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 51399557 - 51399455
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||| || |||||||||    
T  51399557 agtatttatttggtatcgctttggtcccttaagtaataaaaggtccgttttggtcccttaactttagttaaagtaacggtttggtcccttatgttaattt 51399458  T
Q  325 aat 327  Q
    |||    
T  51399457 aat 51399455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 36215694 - 36215777
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36215694 tttggtcccataagtaataaaaggtccgtttagattccttaactttatttaaagtatcggtttggtcctttctgttaatttaat 36215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 55620238 - 55620321
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  55620238 tttggtcccataagtaataaaaagtctgtttaggtcccttaactttattaaaagtatcagtttggtcctttctgttaatttaat 55620321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 55627542 - 55627625
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  55627542 tttggtcccataagtaataaaaagtctgtttaggtcccttaactttattaaaagtatcagtttggtcctttctgttaatttaat 55627625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 8607821 - 8607904
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  8607821 tttgatcccataagtaataaaaggtccgtttaagtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaat 8607904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 17254776 - 17254685
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||||||||    
T  17254776 agtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaactttatttaaagtgtcagtttggtcttttctgttaatttaat 17254685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 1113256 - 1113338
Alignment:
Q  245 ttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  1113256 ttggtcccataagtaataaaaagtctgtttaggtcccttaactttatttaaagtatcagtttggtcgtttctgttaatttaat 1113338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 1113507 - 1113416
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||| || ||||| ||| |||| ||||||||||||| ||| |||||||||||||||||| || ||||||||||||    
T  1113507 agtattgatttggtcccataaatattaaaaggtctgtttaggtcccttaacttcatttaaagtatcggtttggtcccttttgttaatttaat 1113416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 29430235 - 29430144
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||||||||||||||||||||| ||  |||| | |||||||| |||||| |||||||| ||| |||||||||||||||||||||    
T  29430235 agtattggtttggtcccataagtaataaaaggtatgtttagatcccttaattttatttaaagtatcagttcggtcctttctgttaatttaat 29430144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 17254490 - 17254573
Alignment:
Q  246 tggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaatgc 329  Q
    ||||| |||||||||||||||||   |||||||||||||||||||||  ||||||||||||| ||| || ||||||||||||||    
T  17254490 tggtctcataagtaataaaatgtttattttggtcccttaactttatttcaagtatcggtttgatcccttatgttaatttaatgc 17254573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 24039295 - 24039378
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| || ||||| ||||| |||| |||||| |||||||||||||| || ||||| ||||||||||    
T  24039295 tttggtcccataagtaataaaaagttcgtttaggtcctttaattttatttaaagtatcggtttgatcttttctattaatttaat 24039378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 24039579 - 24039488
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||| |||||||||||||| || ||||| |||||||||||||||||  ||||||||||||  || ||| ||||||||||||    
T  24039579 agtattggtttggtctcataagtaataaaaggttcgtttaggtcccttaactttattttaagtatcggtttaatcatttatgttaatttaat 24039488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 36215939 - 36215856
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| ||| |||||||| |||||||| | || ||||||||||||||||||| || |||||||| |||||||||||||||    
T  36215939 tttggtcccttaaataataaaaagtccgtttagttcgcttaactttattgaaagtaacgatttggtcccttctgttaatttaat 36215856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 51024484 - 51024575
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||||||||||||  | |||||  || ||||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  51024484 agtattgatttggtcccataagtaataaaagtttcgtttaagttccttaacattatttaaagtatcagtttagtcctttctgttaatttaat 51024575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 43099376 - 43099451
Alignment:
Q  251 ccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||| |||||||| ||||| ||||||||||| ||||||||| ||||||| ||||| || |||||||    
T  43099376 ccataagtaataaaaggtccgtttaggtcc-ttaactttatttaaagtatcgttttggtcatttctattgatttaat 43099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 48018655 - 48018738
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||| |||||||||||| || |||| | |||||||| |||||| ||||||||| |||| || ||||| ||||||||||    
T  48018655 tttggtcccaaaagtaataaaatatctgtttagatcccttaattttatttaaagtatcgatttgatcatttctattaatttaat 48018738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 55561064 - 55561147
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||| ||||||||||||||| ||  | |  |||| |||||||||||| |||||||| |||| ||  ||||||||||||||||    
T  55561064 tttggttccataagtaataaaaagtttgctaaggtctcttaactttatttaaagtatcagttttgttatttctgttaatttaat 55561147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 55561290 - 55561223
Alignment:
Q  260 ataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| || |||| ||||||||||||||||| |||||||||||||  || ||| | ||||||||||    
T  55561290 ataaaatatctgtttaggtcccttaactttatttaaagtatcggttttatcttttttattaatttaat 55561223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 42872372 - 42872334
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtccct 282  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  42872372 tttggtcccataattaataaaatgtacgttttggtccct 42872334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 33075233 - 33075201
Alignment:
Q  242 gctttggtcccataagtaataaaatgtccgttt 274  Q
    |||||||||||||||||||||||| ||||||||    
T  33075233 gctttggtcccataagtaataaaaagtccgttt 33075201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 36065555 - 36065418
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36065555 agtatttatttagtatcgttttggtctcataagtaataaaaggtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 36065456  T
Q  325 aatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||| |       ||||||||||||| ||||||||||||    
T  36065455 aattcaaaaaaacgttaaattttgatctcttatcttat 36065418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 227 - 362
Target Start/End: Complemental strand, 10373354 - 10373219
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    |||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10373354 tatttatttagtatcgctttggtcccctaagtaataaaagatccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 10373255  T
Q  327 tgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    | |       | ||||||||||| ||||||||||||    
T  10373254 ttcaaaaaaacattaaattttgatctcttatcttat 10373219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 16203784 - 16203682
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16203784 agtatctatttagtatcgctttggtcccataagtaataaaaggtccgttttggtcccttaactttattgaaagtatcggtttgatcctttctgttaattt 16203685  T
Q  325 aat 327  Q
    |||    
T  16203684 aat 16203682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 25946167 - 25946065
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||  |||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  25946167 agtatttatttgatattgctttggttccataagtaataaaaggtctgttttggtcccttaactttatagaaagtattggtttggtcctttcggttaattt 25946068  T
Q  325 aat 327  Q
    |||    
T  25946067 aat 25946065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 16581337 - 16581465
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| ||||||| |||||||||| | || |||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  16581337 tggcttaaatgctcttttggtcccttaagtatttatttgggatcgctttggtcc-ataagtaataaaaggtccgtttaggtcccttaactttatttaaag 16581435  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||| |||||||||||||||||||    
T  16581436 tatcggtttgatcctttctgttaatttaat 16581465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 38978954 - 38978854
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| |||||||||||||| ||||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  38978954 tatttatttggtatcgctttggtcccatatgtaataaaaagttcgtttgggtcccttaactttatttaaagtatcagtttggtcctttctgttaatttaa 38978855  T
Q  327 t 327  Q
    |    
T  38978854 t 38978854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 12701972 - 12702055
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  12701972 tttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtattggtttggtcctttctgttaatttaat 12702055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 25945826 - 25945954
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| |||||||||  |||| ||||||||||||||||||||||||  || |||| ||||||||||||||||| |||||    
T  25945826 ggcttaaatgatcttttggtcccttaagtatttattcggtatcgctttggtcccataagtaataaaagatctgtttaggtcccttaactttatttaaagt 25945925  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    ||| ||||| ||||||| |||||||||||    
T  25945926 atcagtttgatcctttcagttaatttaat 25945954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 12702248 - 12702168
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| ||||||||| |||||||||    
T  12702248 tttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaaatatcggtctggtcctttttgttaattt 12702168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 36065267 - 36065342
Alignment:
Q  252 cataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  36065267 cataagtaataaaagatccgtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaat 36065342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 2217929 - 2217849
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||  |||| || |||||||||||||    
T  2217929 tttggtcccataagtaataaaatgtccgtttatgtcccttaactttatttaaagtatcaatttgatcatttctgttaattt 2217849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 16203472 - 16203572
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| |||||| || | |||||||||||| ||||||||  |||||||||||||||| |||||||||||||| || ||||| |||||||||    
T  16203472 tatttatttggtatcgctttgatctcgtaagtaataaaaggtccgtttaagtcccttaactttatttaaagtatcggtttgatcatttctattaatttaa 16203571  T
Q  327 t 327  Q
    |    
T  16203572 t 16203572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 12261146 - 12261063
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||||| ||||||| |||||||| | ||||||||||||||| ||||| |||| |||||||||||| ||||||||||    
T  12261146 tttggtcacataagcaataaaaggtccgtttagctcccttaactttatttaaagtgtcggcttggtcctttcttttaatttaat 12261063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 16581626 - 16581559
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttatt 292  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||| |||||||||    
T  16581626 agtatttatttagtatcgctttggtcccataagtaataaaaggtctgttttggcccctaaactttatt 16581559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 21304373 - 21304455
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||||||||||| ||||| | || |||||||||||| ||| |||| |||| ||||||||||||||||||||    
T  21304373 tttggtcccataagtaataaaatgttcgtttagatcgcttaactttatttaaa-tatcagtttagtcctttctgttaatttaat 21304455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 38978713 - 38978767
Alignment:
Q  260 ataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtccttt 314  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  38978713 ataaaaggtccgttttggtcccttaactttatttaaagtaacggtttggtccttt 38978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 45115029 - 45115074
Alignment:
Q  280 ccttaactttattgaaagtatcggtttggtcctttctgttaattta 325  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||    
T  45115029 ccttaactttatttaaagtatcggtttgatcttttctgttaattta 45115074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 1983590 - 1983488
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  1983590 agtatttatttagtatcgctttggtcccataagtaataaaaggtccgttttggccccttaactttattaaaagtatcggtttggtcctttctgttaattt 1983491  T
Q  325 aat 327  Q
    |||    
T  1983490 aat 1983488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 17115686 - 17115523
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| ||||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  17115686 ggcttaaatgctcttttggtcccttacgtatttatttagtatcgttttggtcccataagtaataaaaggttcgttttggtcccttaacttgattgaaagt 17115587  T
Q  299 atcggtttggtcctttctgttaatttaatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    ||| ||||||||||||||||||||||||| |       ||||||||||||| | ||||||||||    
T  17115586 atcagtttggtcctttctgttaatttaattcaaacaaacgttaaattttgatcccttatcttat 17115523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 18508523 - 18508652
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||    
T  18508523 tggcttaaatgctcttttgatcccttaagtatttatttagtatcgctttgatcccataagtaataaaaggtccattttggttccttagctttattgaaag 18508622  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    ||| ||||||||||||||||||||||||||    
T  18508623 tattggtttggtcctttctgttaatttaat 18508652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 35463902 - 35463802
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35463902 tatttatttggtatcgctttggtcccataagtaataaaaagtctgtttcggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaa 35463803  T
Q  327 t 327  Q
    |    
T  35463802 t 35463802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 14662701 - 14662601
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| ||||||||||||||||||||||||   |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14662701 tatttatttggtatcgctttggtcccataagtaataaaaaaaccgtttaggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaa 14662602  T
Q  327 t 327  Q
    |    
T  14662601 t 14662601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 35463590 - 35463690
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| |||||| |||| |||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||    
T  35463590 tatttatttggtatcgctttgatcccttaagtaataaaatgtctgttttggtcccttaactttagttaaagtaacggtttggtcccttctgttaatttaa 35463689  T
Q  327 t 327  Q
    |    
T  35463690 t 35463690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 18508861 - 18508761
Alignment:
Q  227 tatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||| |||| | ||||||||||||| |||||||| ||| |||| ||| ||||||||||||| |||||||||||||| || |||||||||||||||    
T  18508861 tatttatttggtatcgatttggtcccataaataataaaaagtctgtttaggttccttaactttatttaaagtatcggtttgatcttttctgttaatttaa 18508762  T
Q  327 t 327  Q
    |    
T  18508761 t 18508761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 14662389 - 14662490
Alignment:
Q  225 agtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    ||||||||||| | || ||||||||||| |||||||||||| || ||||||||| ||||||||||||| |||||| ||||||||||| |||| |||||||    
T  14662389 agtatttatttggcatcgctttggtcccttaagtaataaaaggttcgttttggt-ccttaactttatttaaagtaacggtttggtcccttctattaattt 14662487  T
Q  325 aat 327  Q
    |||    
T  14662488 aat 14662490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 8417615 - 8417687
Alignment:
Q  255 aagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||  ||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||||||    
T  8417615 aagtaataaaagttccgtttaggtcccttaactttatttaaagtatcagtctggtcatttctgttaatttaat 8417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 9990007 - 9990083
Alignment:
Q  251 ccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||| |||||||| ||  |||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  9990007 ccataattaataaaaggtatgtttaggtcccttaactttatttaaagtatcggtttgatcccttctgttaatttaat 9990083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 18968546 - 18968637
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||  |||||  |||||||  ||||||| ||||||||||||||||| |||||||||||||||||| || |||| |||||||    
T  18968546 agtattggtttggtttcataatcaataaaagatccgtttaggtcccttaactttatttaaagtatcggtttggtcccttttgttgatttaat 18968637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 9990218 - 9990162
Alignment:
Q  271 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  9990218 gtttaggtcccttaactttatttaaagtatcggattggtcctttatgttaatttaat 9990162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 8417853 - 8417798
Alignment:
Q  272 ttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||| |||||| |||||||  ||||||||||||| |||||||||||    
T  8417853 ttttggtcccttaattttatttaaagtattagtttggtcctttcagttaatttaat 8417798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 36207490 - 36207415
Alignment:
Q  252 cataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||  | ||||  | ||| |||| |||||| ||||||||||||| |||||||| |||||||||||    
T  36207490 cataagtaataaaaaattcgttaagatccgttaattttatttaaagtatcggtttagtcctttcggttaatttaat 36207415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 24503227 - 24503267
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtccctta 284  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  24503227 tttggtcccataagtaataaaacgtaccttttggtccctta 24503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 24509109 - 24509069
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtccctta 284  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  24509109 tttggtcccataagtaataaaacgtaccttttggtccctta 24509069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 34899024 - 34898984
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtccctta 284  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  34899024 tttggtcccataagtaataaaaagtacattttggtccctta 34898984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 10719356 - 10719519
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| | ||| ||| ||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||    
T  10719356 ggcttaaatgctcttttggtcccttaagtatttatttagtatcgctttggtcccataaataataaaaggtccgttttggccccttaactttattaaaagt 10719455  T
Q  299 atcggtttggtcctttctgttaatttaatgcnnnnnnncgttaaattttgaactcttatcttat 362  Q
    |||||||||||||||| |||||||||||| |       ||||||||||||| | ||||||||||    
T  10719456 atcggtttggtcctttttgttaatttaattcaaaaaaacgttaaattttgatcccttatcttat 10719519  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 10719692 - 10719563
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| ||||||| |||||||||| |||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  10719692 tggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggttccataagtaataaaaggtccgtttaggtcccttaactttatttaaag 10719593  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||| |||||||||||||||||||    
T  10719592 tatcggtttgatcctttctgttaatttaat 10719563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 327
Target Start/End: Complemental strand, 45823163 - 45823026
Alignment:
Q  191 taaaaatatggcttaaacgttctcttgatcccttagtatttattt--agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactt 288  Q
    ||||||||||||||||| ||||  |||||||||||   || ||||  | ||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  45823163 taaaaatatggcttaaatgttcaattgatcccttaac-ttgatttcaaatattggtttggtcccataagtaataaaaagtccgtttaggtcccttaactt 45823065  T
Q  289 tattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  45823064 tatttaaagtatcggtttggtcctttctgttaatttaat 45823026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 39277904 - 39277821
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39277904 tttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaat 39277821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 28990628 - 28990537
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  28990628 agtattggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtatcagtttggtcctttctgttaatttaat 28990537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 39277627 - 39277710
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  39277627 tttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagtatcagtttggtcctttctgttaatttaat 39277710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 35814455 - 35814326
Alignment:
Q  199 tggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaag 297  Q
    ||||||||| | ||| ||| ||||||| ||||||| || |||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||    
T  35814455 tggcttaaatgctcttttggtcccttaagtatttacttggtatcgctttggtcccttaagtaataaaaggtccgtttaggtcccttaactttatttaaag 35814356  T
Q  298 tatcggtttggtcctttctgttaatttaat 327  Q
    |||| ||||| ||||||||| |||||||||    
T  35814355 tatcagtttgatcctttctgataatttaat 35814326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 10394175 - 10394258
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| || ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10394175 tttggtcccataagtaataaaaggttcgtttagatcccttaactttatttaaagtatcggtttggtcctttctgttaatttaat 10394258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 35814122 - 35814216
Alignment:
Q  233 tttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||  ||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  35814122 tttagtatcactttggttccataagtaataaaaggtccgttttgctcccttaactttagtgaaagtgtcggtttggtcctttctattaatttaat 35814216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 7714217 - 7714300
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| ||| || | ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  7714217 tttggtcccataagtaataaaaagtctgtctaggtcccttaactttatttaaagtatcagtttggtcctttctgttaatttaat 7714300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 10394460 - 10394369
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  10394460 agtattgttttggtcccataaatattaaaaggtccgtttaggtcccttaactttatttaaagtatcggtttggtcccttttgttaatttaat 10394369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 28990344 - 28990427
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  28990344 tttggtcccataagtaataaaaggtccgcttaggtcccttaactttatttaaagtatcggtctggtcctttttgttaatttaat 28990427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 47422183 - 47422100
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||| | ||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  47422183 tttggtcccataagtaataagaggtctgtttaggtcccttaactttatttaaagtatcggtttggtcatttctgttaatttaat 47422100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 47421936 - 47422016
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaattt 324  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||    
T  47421936 tttggtcccataagtaataaaatgtctgtttaggtcccttaactttatttaaattatcagtttggtcctttatgttaattt 47422016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 45822832 - 45822915
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| | || ||||||||||||||||||||    
T  45822832 tttggtcccataagtaataaaaagtccgtttaggttccttaactttatttaaagtatcagcttagtcctttctgttaatttaat 45822915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 52285091 - 52285181
Alignment:
Q  236 agtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||    
T  52285091 agtattggtttggtctcataagtaataaaaagtccgtttaggtcc-ttaactttatttaaagtatcagtttgatcctttctgttaatttaat 52285181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 52285374 - 52285291
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  52285374 tttggtcctataagtaataaaaggtctgtttaggtcccttaactttatttaaagtatccgtttggtcatttctgttaatttaat 52285291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 15158368 - 15158451
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||||||||||| || ||||| |||||||||| ||||||  ||||||||||||||||| |||| ||||||||||    
T  15158368 tttggtcccataagtaataaaaggttcgtttaggtcccttaaatttatttcaagtatcggtttggtccgttctattaatttaat 15158451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 19920550 - 19920633
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||| ||||||||  || ||||||||||||    
T  19920550 tttggtcccataagtaataaaagatccgtttaggtcccttaactttatttaaagtatcagtttggtctcttatgttaatttaat 19920633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 27334390 - 27334473
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||||  ||||||| ||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  27334390 tttggtctcataagtaataaaagatccgtttaggtcccttaactttatttaaagtaatggtttggtcccttctgttaatttaat 27334473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 30049960 - 30050043
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| |||| ||||||||| ||||||||  |||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  30049960 tttggtctcatatgtaataaaaagtccgtttgagtcccttaactttatttaaagtatcagtttggtcttttctgttaatttaat 30050043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 36076935 - 36077013
Alignment:
Q  249 tcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  36076935 tcccataagtaataaaaggttcgtttaggtcccttaactttatttaaagtatcggtttggtctcttctgttaatataat 36077013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 7714480 - 7714411
Alignment:
Q  257 gtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||||||||    
T  7714480 gtaataaaaagtccgtttaggtcccttaagtttatttaaa-tatcagtttggtcctttctgttaatttaat 7714411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 16959160 - 16959077
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||||||||||||  |  |||| ||||||||||||||||| |||| ||| ||||| |||||| ||| ||||||||    
T  16959160 tttggtcccataagtaataaaaattatgtttaggtcccttaactttatttaaagcatcagtttgatcctttatgtcaatttaat 16959077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 30050237 - 30050154
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| || ||||||||||| ||||| ||  ||| |||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  30050237 tttggtcgcacaagtaataaaaagtccgattatgtctcttaactttatttaaagtatcaatttggtcatttctgttaatttaat 30050154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 49186045 - 49186128
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||  ||||||||||||| ||||||||  |||| ||||||||||| ||||||  |||||||||  |||||||||||||||    
T  49186045 tttggtcttataagtaataaaaggtccgtttacgtcctttaactttatttaaagtaatggtttggtcacttctgttaatttaat 49186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 16958887 - 16958966
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||||||||| |||||||| |||| ||| ||||||||||||||||| ||| |||| ||||||    |||||||||||||||    
T  16958887 tttggtcccataaataataaaaggtccatttaggtcccttaactttatttaaattatcagtttgg----ttctgttaatttaat 16958966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 5682963 - 5683014
Alignment:
Q  276 ggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||| ||||||||||    
T  5682963 ggtcctttaacgttatttaaagtatcgttttggtcctttctattaatttaat 5683014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 30049928 - 30049966
Alignment:
Q  272 ttttggtcccttaactttattgaaagtatcggtttggtc 310  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  30049928 ttttggtcccttaactttatttcaagtatcggtttggtc 30049966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 15158578 - 15158530
Alignment:
Q  278 tcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    ||||||||||||||| |||| ||   |||||||||||||||||||||||    
T  15158578 tcccttaactttatttaaagcattaatttggtcctttctgttaatttaa 15158530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 959009 - 959137
Alignment:
Q  200 ggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagt 298  Q
    |||||||| ||||| ||  ||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  959009 ggcttaaatgttctttttgtcccttaagtatttatttagtatcgctttagtcccataagtaataaaaggtccgttttggtcccttaactttattgaaagt 959108  T
Q  299 atcggtttggtcctttctgttaatttaat 327  Q
    ||||||||| |||||||| || |||||||    
T  959109 atcggtttgatcctttctcttgatttaat 959137  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 327
Target Start/End: Complemental strand, 959377 - 959247
Alignment:
Q  198 atggcttaaacgttctcttgatccctta-gtatttatttagtattgctttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaa 296  Q
    |||||||||| | ||| ||| ||||||| |||||||||| | || |||||||||||||||||||||||| || ||||| ||||||||||||||||| |||    
T  959377 atggcttaaatgctcttttggtcccttaagtatttatttgggatcgctttggtcccataagtaataaaaggttcgtttaggtcccttaactttatttaaa 959278  T
Q  297 gtatcggtttggtcctttctgttaatttaat 327  Q
    ||||| ||||  |||||||||||||||||||    
T  959277 gtatcagtttaatcctttctgttaatttaat 959247  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 1211439 - 1211522
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||| ||||||| ||||||||| |||||||| ||||  |||| |||||| |||||||||||||||||| || ||||||||||||    
T  1211439 tttgatcccatatgtaataaaaggtccgtttaggtcatttaattttatttaaagtatcggtttggtcccttttgttaatttaat 1211522  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 1211717 - 1211634
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    ||||||| ||||||||||||||  || |||| | ||||||||||||||| ||||||| ||| |||||| || ||||||||||||    
T  1211717 tttggtctcataagtaataaaagatctgtttagatcccttaactttatttaaagtattggtatggtccattttgttaatttaat 1211634  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 20489465 - 20489433
Alignment:
Q  233 tttagtattgctttggtcccataagtaataaaa 265  Q
    |||||||||||||||||||||||||||||||||    
T  20489465 tttagtattgctttggtcccataagtaataaaa 20489433  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 233754 - 233672
Alignment:
Q  244 tttggtcccataagtaataaaatgtccgttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaa 326  Q
    |||||| |||||||||||||||  ||||||| | ||||||||||||||| |||||||| |||||||  ||||| |||||||||    
T  233754 tttggttccataagtaataaaagatccgtttagatcccttaactttatttaaagtatcagtttggttttttctattaatttaa 233672  T

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Target: scaffold0130 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 25567 - 25491
Alignment:
Q  252 cataagtaataaaatgtccgttttggtccctt-aactttattgaaagtatcggtttggtcctttctgttaatttaat 327  Q
    |||||||||||||   ||||||| ||||| || |||||| || |||||||||||||| ||| |||||||||||||||    
T  25567 cataagtaataaatgatccgtttaggtccttttaactttgtttaaagtatcggtttgatcccttctgttaatttaat 25491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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