View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0459_high_1 (Length: 455)
Name: NF0459_high_1
Description: NF0459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0459_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 144 - 450
Target Start/End: Complemental strand, 39931292 - 39930986
Alignment:
| Q |
144 |
atgtaaatttcactgtttttctcactatnnnnnnntggatcatattatatttacacaaaaaattaagcatgtttatatttaattttatactgttgaataa |
243 |
Q |
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| T |
39931292 |
atgtaaatttcactgtttttctcactataaaaaaatggatcattttatatttacacaaaaaattaagcatgtttatatttaattttatactgttgaataa |
39931193 |
T |
|
| Q |
244 |
actataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactg |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39931192 |
actataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactg |
39931093 |
T |
|
| Q |
344 |
caactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctt |
443 |
Q |
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| T |
39931092 |
caactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctt |
39930993 |
T |
|
| Q |
444 |
tgcttct |
450 |
Q |
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||||||| |
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| T |
39930992 |
tgcttct |
39930986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 246 - 450
Target Start/End: Original strand, 39691027 - 39691231
Alignment:
| Q |
246 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca |
345 |
Q |
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| T |
39691027 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca |
39691126 |
T |
|
| Q |
346 |
actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctttg |
445 |
Q |
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|||| ||| ||| ||||| ||||||||||| ||| |||||||| | || || |||||| ||||||| ||||||||||| || |||| |||||||||| |
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| T |
39691127 |
gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcctttg |
39691226 |
T |
|
| Q |
446 |
cttct |
450 |
Q |
| |
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||||| |
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| T |
39691227 |
cttct |
39691231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 39931601 - 39931487
Alignment:
| Q |
30 |
caaacattattaattcactcacttttacatatcaaaatcattttgttt-gagtcttaatcatatagtattcatgattttagctgaaagttaagtaaagta |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| | ||||||||||||||||| |
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|
| T |
39931601 |
caaacattattaattcactcacttttacatatcaaaatcattttgttttgagtcttaatcatgtaatattcatgattttaaccgaaagttaagtaaagta |
39931502 |
T |
|
| Q |
129 |
tgatcaataattatc |
143 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
39931501 |
tgatcagtaattatc |
39931487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 444
Target Start/End: Original strand, 39700204 - 39700414
Alignment:
| Q |
234 |
tgttgaataaactataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaag |
333 |
Q |
| |
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|||||| |||| |||||||||| |||||||| ||||||| | ||| | ||||||| || || |||||||||||||||| || |||||||||||||||| |
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| T |
39700204 |
tgttgattaaattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaag |
39700303 |
T |
|
| Q |
334 |
agcatcactgcaactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttct |
433 |
Q |
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||||||| |||| |||||||| ||| ||||| ||||||||| ||| | |||| ||| | | || |||||| ||||||||||||||||||| ||||||| |
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| T |
39700304 |
agcatcaatgcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttct |
39700403 |
T |
|
| Q |
434 |
atgttgccttt |
444 |
Q |
| |
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|||||||||| |
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|
| T |
39700404 |
ctgttgccttt |
39700414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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